picd-1 Pry-1 Interacting and CABIN1 Domain containing [Caenorhabditis elegans] - Gene

Summary

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Official Symbol: picd-1
Official Full Name: Pry-1 Interacting and CABIN1 Domain containing
Primary source: WormBase:WBGene00018975
Locus tag: CELE_F56E10.1
See related: AllianceGenome:WB:WBGene00018975
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to be involved in chromatin organization. Predicted to be located in nucleus. Is expressed in several structures, including body wall musculature; head neurons; intestine; pharynx; and vulva. Human ortholog(s) of this gene implicated in ovarian carcinoma. Orthologous to human CABIN1 (calcineurin binding protein 1). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See picd-1 in Genome Data Viewer

Location:: chromosome: V

Exon count:: 13

Sequence:: Chromosome: V; NC_003283.11 (104825..118205)

Chromosome V - NC_003283.11 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

F56E10.1 (e-PCR)
- UniSTS:306946

F56E10.4 (e-PCR)
- UniSTS:316821

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
contributes_to nucleosome binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in chromatin organization	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: Pry-1 Interacting and CABIN1 Domain containing

NP_001299995.1

Confirmed by transcript evidence;
Product from WormBase gene class picd

NP_001299996.1

Confirmed by transcript evidence;
Product from WormBase gene class picd

NCBI Reference Sequences (RefSeq)

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Genome Annotation

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Reference assembly

Genomic

NC_003283.11 Reference assembly

Range

104825..118205

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001313066.2 → NP_001299995.1 Pry-1 Interacting and CABIN1 Domain containing [Caenorhabditis elegans]

Status: REVIEWED

UniProtKB/TrEMBL

A0A0K3AS47

Conserved Domains (1) summary

PRK09510
Location:1798 → 1851

tolA; cell envelope integrity inner membrane protein TolA; Provisional
NM_001313067.4 → NP_001299996.1 Pry-1 Interacting and CABIN1 Domain containing [Caenorhabditis elegans]

Status: REVIEWED

UniProtKB/TrEMBL

A0A0K3AUI7

Conserved Domains (1) summary

pfam16031
Location:1926 → 1972

TonB_N; TonB N-terminal region