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    Y48G10A.2 E3 ubiquitin-protein ligase UBR7;RING-type E3 ubiquitin transferase [ Caenorhabditis elegans ]

    Gene ID: 173218, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Y48G10A.2
    Official Full Name
    E3 ubiquitin-protein ligase UBR7;RING-type E3 ubiquitin transferase
    Primary source
    WormBase:WBGene00013019
    Locus tag
    CELE_Y48G10A.2
    See related
    AllianceGenome:WB:WBGene00013019
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable transferase activity. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Y48G10A.2 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    8
    Sequence:
    Chromosome: I; NC_003279.8 (13477152..13487368, complement)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene INTegrator complex Subunit homolog Neighboring gene ncRNA Neighboring gene Protein NDRG3 Neighboring gene ncRNA Neighboring gene S-formylglutathione hydrolase Neighboring gene Protein soem-1 Neighboring gene Peroxisomal coenzyme A diphosphatase ndx-8

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. DEPS-1 is required for piRNA-dependent silencing and PIWI condensate organisation in Caenorhabditis elegans. Suen KM, et al. Nat Commun, 2020 Aug 25. PMID 32843637, Free PMC Article
    2. In Vivo Interaction Proteomics in Caenorhabditis elegans Embryos Provides New Insights into P Granule Dynamics. Chen JX, et al. Mol Cell Proteomics, 2016 May. PMID 26912668, Free PMC Article
    3. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    4. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase UBR7;RING-type E3 ubiquitin transferase
    NP_001252171.1
    • Confirmed by transcript evidence
    NP_001252172.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      13477152..13487368 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001265242.4 → NP_001252171.1  E3 ubiquitin-protein ligase UBR7 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001252171.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9U284

    2. NM_001265243.4 → NP_001252172.1  RING-type E3 ubiquitin transferase [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001252172.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2KML5
    Nucleotide Protein
    Heading Accession and Version

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