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    phat-3 ShKT domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 178809, updated on 9-Dec-2024

    Summary

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    Official Symbol
    phat-3
    Official Full Name
    ShKT domain-containing protein
    Primary source
    WormBase:WBGene00016782
    Locus tag
    CELE_C49G7.4
    See related
    AllianceGenome:WB:WBGene00016782
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Involved in nematode pharyngeal gland morphogenesis. Is expressed in pharyngeal gland cell. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See phat-3 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    3
    Sequence:
    Chromosome: V; NC_003283.11 (4043932..4044951)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Anoctamin;Glycosyltransferase family 92 protein Neighboring gene Infection Response Gene Neighboring gene ShKT domain-containing protein Neighboring gene Serpentine Receptor, class H

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An abundantly expressed mucin-like protein from Toxocara canis infective larvae: the precursor of the larval surface coat glycoproteins. Gems D, et al. Proc Natl Acad Sci U S A, 1996 Feb 20. PMID 8643687, Free PMC Article
    2. The HLH-6 transcription factor regulates C. elegans pharyngeal gland development and function. Smit RB, et al. PLoS Genet, 2008 Oct. PMID 18927627, Free PMC Article
    3. RNA targets and specificity of Staufen, a double-stranded RNA-binding protein in Caenorhabditis elegans. LeGendre JB, et al. J Biol Chem, 2013 Jan 25. PMID 23195953, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in innate immune response IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in nematode pharyngeal gland morphogenesis IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ShKT domain-containing protein
    NP_504129.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      4043932..4044951
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_071728.6 → NP_504129.1  ShKT domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_504129.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O16225
      Conserved Domains (1) summary
      pfam01549
      Location:158 → 193
      ShK; ShK domain-like
    Nucleotide Protein
    Heading Accession and Version

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