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    B0546.3 SRR1 domain-containing protein;Yippee domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 182030, updated on 9-Dec-2024

    Summary

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    Official Symbol
    B0546.3
    Official Full Name
    SRR1 domain-containing protein;Yippee domain-containing protein
    Primary source
    WormBase:WBGene00015250
    Locus tag
    CELE_B0546.3
    See related
    AllianceGenome:WB:WBGene00015250
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be part of ubiquitin ligase complex. Orthologous to human YPEL5 (yippee like 5). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See B0546.3 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    6
    Sequence:
    Chromosome: IV; NC_003282.8 (3378485..3382841, complement)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene G-protein coupled receptors family 1 profile domain-containing protein Neighboring gene V-type proton ATPase subunit S1 Neighboring gene ubiquitinyl hydrolase 1 Neighboring gene Protein yippee-like B0546.4 Neighboring gene ATPase inhibitor mai-2, mitochondrial

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    part_of ubiquitin ligase complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    SRR1 domain-containing protein;Yippee domain-containing protein
    NP_001294508.1
    • Confirmed by transcript evidence
    NP_001294510.1
    • Confirmed by transcript evidence
    NP_001368282.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      3378485..3382841 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001307579.3 → NP_001294508.1  Yippee domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001294508.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      U4PBQ7
      Conserved Domains (1) summary
      cl13152
      Location:15 → 107
      RLR_C_like; C-terminal domain of Retinoic acid-inducible gene (RIG)-I-like Receptors, Cereblon (CRBN), and similar protein domains

    2. NM_001380142.1 → NP_001368282.1  SRR1 domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      U4PC30

    3. NM_001307581.3 → NP_001294510.1  Yippee domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001294510.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      U4PMI3
    Nucleotide Protein
    Heading Accession and Version

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