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    lpr-6 LiPocalin-Related protein [ Caenorhabditis elegans ]

    Gene ID: 181296, updated on 9-Dec-2024

    Summary

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    Official Symbol
    lpr-6
    Official Full Name
    LiPocalin-Related protein
    Primary source
    WormBase:WBGene00012255
    Locus tag
    CELE_W04G3.1
    See related
    AllianceGenome:WB:WBGene00012255
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in lipid transport. Predicted to be located in extracellular region. Is expressed in amphid neurons. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See lpr-6 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    6
    Sequence:
    Chromosome: X; NC_003284.9 (11059994..11061871)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Glycosyltransferase 2-like domain-containing protein Neighboring gene ncRNA Neighboring gene LiPocalin-Related protein Neighboring gene ncRNA Neighboring gene LiPocalin-Related protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Determining genetic expression profiles in C. elegans using microarray and real-time PCR. Guthmueller KL, et al. J Vis Exp, 2011 Jul 30. PMID 21841763, Free PMC Article
    2. Lipocalin signaling controls unicellular tube development in the Caenorhabditis elegans excretory system. Stone CE, et al. Dev Biol, 2009 May 15. PMID 19269285, Free PMC Article
    3. Genome-wide analysis of sex-enriched gene expression during C. elegans larval development. Thoemke K, et al. Dev Biol, 2005 Aug 15. PMID 15987632
    4. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in lipid transport ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    LiPocalin-Related protein
    NP_001257128.1
    • Product from WormBase gene class lpr;
      Partially confirmed by transcript evidence
    NP_001257129.1
    • Product from WormBase gene class lpr;
      Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      11059994..11061871
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001270199.5 → NP_001257128.1  LiPocalin-Related protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001257128.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q23162

    2. NM_001270200.5 → NP_001257129.1  LiPocalin-Related protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001257129.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B6VQ73
    Nucleotide Protein
    Heading Accession and Version

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