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    rps-27 Small ribosomal subunit protein eS27 [ Caenorhabditis elegans ]

    Gene ID: 178538, updated on 9-Dec-2024

    Summary

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    Official Symbol
    rps-27
    Official Full Name
    Small ribosomal subunit protein eS27
    Primary source
    WormBase:WBGene00004496
    Locus tag
    CELE_F56E10.4
    See related
    AllianceGenome:WB:WBGene00004496
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in ribosomal small subunit assembly. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Is expressed in several structures, including body wall musculature; excretory cell; intestine; non-striated muscle; and pharynx. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 17. Orthologous to several human genes including RPS27 (ribosomal protein S27). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See rps-27 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    2
    Sequence:
    Chromosome: V; NC_003283.11 (103394..104064, complement)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Pry-1 Interacting and CABIN1 Domain containing Neighboring gene GTP-binding protein cgp-1;GTP_EFTU_D3 domain-containing protein Neighboring gene Zinc finger ZPR1-type domain-containing protein;Zinc finger protein ZPR1 homolog

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The auxin-inducible degron 2 (AID2) system enables controlled protein knockdown during embryogenesis and development in Caenorhabditis elegans. Negishi T, et al. Genetics, 2022 Feb 4. PMID 34865044, Free PMC Article
    2. Molecular phylogeny of beetle associated diplogastrid nematodes suggests host switching rather than nematode-beetle coevolution. Mayer WE, et al. BMC Evol Biol, 2009 Aug 24. PMID 19703296, Free PMC Article
    3. Nucleolar proteins suppress Caenorhabditis elegans innate immunity by inhibiting p53/CEP-1. Fuhrman LE, et al. PLoS Genet, 2009 Sep. PMID 19763173, Free PMC Article
    4. A human protein interaction network shows conservation of aging processes between human and invertebrate species. Bell R, et al. PLoS Genet, 2009 Mar. PMID 19293945, Free PMC Article
    5. Identification of innate immunity genes and pathways using a comparative genomics approach. Alper S, et al. Proc Natl Acad Sci U S A, 2008 May 13. PMID 18463287, Free PMC Article

    See all (17) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in ribosomal small subunit assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of cytosolic small ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Small ribosomal subunit protein eS27
    NP_001370756.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      103394..104064 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001383266.2 → NP_001370756.1  Small ribosomal subunit protein eS27 [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9TXP0
      Conserved Domains (1) summary
      PLN00209
      Location:5 → 82
      PLN00209; ribosomal protein S27; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9TXP0.3

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