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    LOC101927847 uncharacterized LOC101927847 [ Homo sapiens (human) ]

    Gene ID: 101927847, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC101927847
    Gene description
    uncharacterized LOC101927847
    See related
    Ensembl:ENSG00000237626
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 1.8) See more
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    Genomic context

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    See LOC101927847 in Genome Data Viewer
    Location:
    9q22.2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (89969416..89987486)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (102134540..102152622)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (92731698..92749768)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107987032 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28558 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28559 Neighboring gene uncharacterized LOC101927823 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28560 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28561 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_108797 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28562 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28565 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28566 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28564 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28563 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr9:92776129-92777328 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_108919 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28567 Neighboring gene MIR4290 host gene Neighboring gene NANOG hESC enhancer GRCh37_chr9:92796466-92797003 Neighboring gene microRNA 4290 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr9:92822514-92823713 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr9:92824519-92825718 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28568 Neighboring gene interleukin 6 receptor pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_109791.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL161629, DB455945
      Related
      ENST00000777495.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      89969416..89987486
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      102134540..102152622
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials