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    Gscdt goosecoid homeobox divergent transcript [ Mus musculus (house mouse) ]

    Gene ID: 791311, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Gscdtprovided by MGI
    Official Full Name
    goosecoid homeobox divergent transcriptprovided by MGI
    Primary source
    MGI:MGI:3641968
    See related
    AllianceGenome:MGI:3641968
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    DIGIT; Gm1000; Gm10000
    Summary
    Is expressed in embryo. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See Gscdt in Genome Data Viewer
    Location:
    12 E; 12 54.33 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (104439789..104497593)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (104473530..104531334)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_33139 Neighboring gene predicted gene, 40562 Neighboring gene STARR-seq mESC enhancer starr_33142 Neighboring gene goosecoid homeobox Neighboring gene predicted gene, 53760 Neighboring gene predicted gene, 31573

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. lncRNA DIGIT and BRD3 protein form phase-separated condensates to regulate endoderm differentiation. Daneshvar K, et al. Nat Cell Biol, 2020 Oct. PMID 32895492, Free PMC Article
    2. DIGIT Is a Conserved Long Noncoding RNA that Regulates GSC Expression to Control Definitive Endoderm Differentiation of Embryonic Stem Cells. Daneshvar K, et al. Cell Rep, 2016 Oct 4. PMID 27705785, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      104439789..104497593
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_381874.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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