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    Them6 thioesterase superfamily member 6 [ Mus musculus (house mouse) ]

    Gene ID: 223626, updated on 9-Dec-2024

    Summary

    Official Symbol
    Them6provided by MGI
    Official Full Name
    thioesterase superfamily member 6provided by MGI
    Primary source
    MGI:MGI:1925301
    See related
    Ensembl:ENSMUSG00000056665 AllianceGenome:MGI:1925301
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4930572J05Rik
    Summary
    Predicted to be located in extracellular region. Orthologous to human THEM6 (thioesterase superfamily member 6). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Broad expression in thymus adult (RPKM 77.3), cerebellum adult (RPKM 28.9) and 19 other tissues See more
    Orthologs
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    Genomic context

    See Them6 in Genome Data Viewer
    Location:
    15 D3; 15 34.26 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (74593083..74596222)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (74721234..74724373)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene jerky Neighboring gene RIKEN cDNA 4933427E11 gene Neighboring gene prostate stem cell antigen Neighboring gene CapStarr-seq enhancer MGSCv37_chr15:74553786-74554003 Neighboring gene secreted Ly6/Plaur domain containing 1 Neighboring gene Ly6/Plaur domain containing 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

    General gene information

    Clone Names

    • MGC54796

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    is_active_in cellular_component  
    located_in extracellular region  

    General protein information

    Preferred Names
    protein THEM6
    Names
    UPF0670 protein C8orf55 homolog
    UPF0670 protein THEM6 homolog
    mesenchymal stem cell protein DSCD75 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_198607.1NP_941009.1  protein THEM6 precursor

      See identical proteins and their annotated locations for NP_941009.1

      Status: PROVISIONAL

      Source sequence(s)
      BC047266
      Consensus CDS
      CCDS27527.1
      UniProtKB/Swiss-Prot
      Q80ZW2
      Related
      ENSMUSP00000069692.2, ENSMUST00000070923.3
      Conserved Domains (1) summary
      pfam13279
      Location:54185
      4HBT_2; Thioesterase-like superfamily

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      74593083..74596222
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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