U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Glt1d1 glycosyltransferase 1 domain containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 319804, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Glt1d1provided by MGI
    Official Full Name
    glycosyltransferase 1 domain containing 1provided by MGI
    Primary source
    MGI:MGI:2442755
    See related
    Ensembl:ENSMUSG00000049971 AllianceGenome:MGI:2442755
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    5730455A04Rik
    Summary
    Predicted to enable glycosyltransferase activity. Predicted to be located in cytosol. Orthologous to human GLT1D1 (glycosyltransferase 1 domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in testis adult (RPKM 16.9), cortex adult (RPKM 4.4) and 10 other tissues See more
    Orthologs
    human all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Glt1d1 in Genome Data Viewer
    Location:
    5 G1.2- G1.3; 5 66.06 cM
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (127709134..127786438)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (127632070..127709374)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene transmembrane protein 132C, opposite strand Neighboring gene transmembrane protein 132C Neighboring gene predicted gene, 54294 Neighboring gene STARR-seq mESC enhancer starr_14401 Neighboring gene STARR-seq mESC enhancer starr_14404 Neighboring gene STARR-seq mESC enhancer starr_14405 Neighboring gene solute carrier family 15, member 4 Neighboring gene STARR-seq mESC enhancer starr_14412 Neighboring gene STARR-seq mESC enhancer starr_14414 Neighboring gene transmembrane protein 132D Neighboring gene STARR-seq mESC enhancer starr_14415 Neighboring gene STARR-seq mESC enhancer starr_14419 Neighboring gene predicted gene, 33738

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Mapping the NPHP-JBTS-MKS protein network reveals ciliopathy disease genes and pathways. Sang L, et al. Cell, 2011 May 13. PMID 21565611, Free PMC Article
    2. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
    3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

    Go to the top of the page Help

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 
    • Gene trapped (1) 

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables glycosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    glycosyltransferase 1 domain-containing protein 1
    NP_795979.2
    XP_006504372.1
    XP_006504373.1
    XP_006504374.1
    XP_011239145.1
    XP_030110433.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_177005.4 → NP_795979.2  glycosyltransferase 1 domain-containing protein 1 precursor

      See identical proteins and their annotated locations for NP_795979.2

      Status: VALIDATED

      Source sequence(s)
      AK077577, BY337475
      Consensus CDS
      CCDS51651.1
      UniProtKB/Swiss-Prot
      A4FUP9, Q8BWP4
      Related
      ENSMUSP00000113864.2, ENSMUST00000118139.3
      Conserved Domains (2) summary
      COG0438
      Location:58 → 340
      RfaB; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
      cl10013
      Location:67 → 328
      Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      127709134..127786438
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006504309.4 → XP_006504372.1  glycosyltransferase 1 domain-containing protein 1 isoform X1

      Conserved Domains (1) summary
      cl10013
      Location:2 → 260
      Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology

    2. XM_011240843.2 → XP_011239145.1  glycosyltransferase 1 domain-containing protein 1 isoform X5

      Conserved Domains (1) summary
      cl10013
      Location:2 → 222
      Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology

    3. XM_030254573.1 → XP_030110433.1  glycosyltransferase 1 domain-containing protein 1 isoform X4

      Conserved Domains (1) summary
      cd03801
      Location:23 → 222
      GT4_PimA-like; phosphatidyl-myo-inositol mannosyltransferase

    4. XM_006504310.3 → XP_006504373.1  glycosyltransferase 1 domain-containing protein 1 isoform X2

      Conserved Domains (2) summary
      pfam09413
      Location:13 → 62
      DUF2007; Putative prokaryotic signal transducing protein
      cl00900
      Location:227 → 283
      Ldh_2; Malate/L-lactate dehydrogenase

    5. XM_006504311.3 → XP_006504374.1  glycosyltransferase 1 domain-containing protein 1 isoform X3

      Conserved Domains (1) summary
      cd03801
      Location:12 → 239
      GT4_PimA-like; phosphatidyl-myo-inositol mannosyltransferase

    RNA

    1. XR_377057.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A4FUP9.2 GenPept UniProtKB/Swiss-Prot:A4FUP9

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools