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    Fam8a1 family with sequence similarity 8, member A1 [ Mus musculus (house mouse) ]

    Gene ID: 97863, updated on 9-Dec-2024

    Summary

    Official Symbol
    Fam8a1provided by MGI
    Official Full Name
    family with sequence similarity 8, member A1provided by MGI
    Primary source
    MGI:MGI:2145496
    See related
    Ensembl:ENSMUSG00000069237 AllianceGenome:MGI:2145496
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to be part of Hrd1p ubiquitin ligase complex. Orthologous to human FAM8A1 (family with sequence similarity 8 member A1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in duodenum adult (RPKM 22.1), CNS E18 (RPKM 20.6) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Fam8a1 in Genome Data Viewer
    Location:
    13 A5; 13 24.28 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (46822953..46831540)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (46669477..46678064)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_34412 Neighboring gene RNA binding motif protein 24 Neighboring gene predicted gene, 35110 Neighboring gene STARR-seq mESC enhancer starr_34413 Neighboring gene STARR-seq mESC enhancer starr_34414 Neighboring gene cyclase associated actin cytoskeleton regulatory protein 2 Neighboring gene VISTA enhancer mm132 Neighboring gene CapStarr-seq enhancer MGSCv37_chr13:46712127-46712352 Neighboring gene STARR-seq mESC enhancer starr_34416 Neighboring gene STARR-seq mESC enhancer starr_34420 Neighboring gene nucleoporin 153 Neighboring gene STARR-positive B cell enhancer ABC_E9876 Neighboring gene CapStarr-seq enhancer MGSCv37_chr13:46831628-46831815 Neighboring gene CapStarr-seq enhancer MGSCv37_chr13:46831840-46832060 Neighboring gene predicted gene, 46412 Neighboring gene kinesin family member 13A Neighboring gene predicted gene, 24620

    Genomic regions, transcripts, and products

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    part_of Hrd1p ubiquitin ligase complex ISO
    Inferred from Sequence Orthology
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033192.3NP_001028364.1  protein FAM8A1 isoform 1

      See identical proteins and their annotated locations for NP_001028364.1

      Status: VALIDATED

      Source sequence(s)
      AC124598
      Consensus CDS
      CCDS26485.1
      UniProtKB/TrEMBL
      Q3TBV3, Q3URQ4
      Related
      ENSMUSP00000097144.4, ENSMUST00000099547.4
      Conserved Domains (1) summary
      pfam06271
      Location:230389
      RDD; RDD family
    2. NM_001377109.1NP_001364038.1  protein FAM8A1 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC124598

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      46822953..46831540
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)