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    Cysltr1 cysteinyl leukotriene receptor 1 [ Mus musculus (house mouse) ]

    Gene ID: 58861, updated on 27-Nov-2024

    Summary

    Official Symbol
    Cysltr1provided by MGI
    Official Full Name
    cysteinyl leukotriene receptor 1provided by MGI
    Primary source
    MGI:MGI:1926218
    See related
    Ensembl:ENSMUSG00000052821 AllianceGenome:MGI:1926218
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Cyslt1; CysLT1R
    Summary
    Enables leukotriene receptor activity. Acts upstream of or within several processes, including calcium ion transport; chemotaxis; and inflammatory response to antigenic stimulus. Located in plasma membrane. Is expressed in central nervous system and retina. Human ortholog(s) of this gene implicated in allergic disease; asthma; and rhinitis. Orthologous to human CYSLTR1 (cysteinyl leukotriene receptor 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in placenta adult (RPKM 1.9), bladder adult (RPKM 1.0) and 18 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Cysltr1 in Genome Data Viewer
    Location:
    X 47.36 cM; X D
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (105617952..105647329, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (106576509..106603679, complement)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene fibronectin type III domain containing 3C1 pseudogene Neighboring gene fibronectin type III domain containing 3C1 Neighboring gene STARR-seq mESC enhancer starr_47737 Neighboring gene predicted gene, 24622 Neighboring gene predicted gene 5127 Neighboring gene predicted gene 14877 Neighboring gene STARR-seq mESC enhancer starr_47738 Neighboring gene zinc finger protein 277 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables G protein-coupled peptide receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables cysteinyl leukotriene receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables leukotriene receptor activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables leukotriene receptor activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    cysteinyl leukotriene receptor 1
    Names
    LTD4 receptor
    cysteinyl leukotriene D4 receptor

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001281859.1NP_001268788.1  cysteinyl leukotriene receptor 1 isoform a

      See identical proteins and their annotated locations for NP_001268788.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate splice site in the 5' UTR, compared to variant 1. Both variants 1 and 2 encode the same isoform (a).
      Source sequence(s)
      AK033476, AL732460
      Consensus CDS
      CCDS41098.1
      UniProtKB/Swiss-Prot
      Q544P1, Q99JA4, Q9JJ71, Q9JK47
      Related
      ENSMUSP00000063520.4, ENSMUST00000064892.4
      Conserved Domains (2) summary
      pfam00001
      Location:55310
      7tm_1; 7 transmembrane receptor (rhodopsin family)
      cl21561
      Location:47264
      7tm_4; Olfactory receptor
    2. NM_001281862.1NP_001268791.1  cysteinyl leukotriene receptor 1 isoform b

      See identical proteins and their annotated locations for NP_001268791.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at a downstream in-frame start codon, compared to variant 1. The encoded isoform (b) has a shorter N-terminus, compared to isoform a.
      Source sequence(s)
      AL732460
      UniProtKB/Swiss-Prot
      Q99JA4
      Conserved Domains (1) summary
      cd15158
      Location:26308
      7tmA_CysLTR1; cysteinyl leukotriene receptor 1, member of the class A family of seven-transmembrane G protein-coupled receptors
    3. NM_021476.5NP_067451.2  cysteinyl leukotriene receptor 1 isoform a

      See identical proteins and their annotated locations for NP_067451.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (a). Both variants 1 and 2 encode the same isoform (a).
      Source sequence(s)
      AK033476, AL732460
      Consensus CDS
      CCDS41098.1
      UniProtKB/Swiss-Prot
      Q544P1, Q99JA4, Q9JJ71, Q9JK47
      Related
      ENSMUSP00000109108.2, ENSMUST00000113480.2
      Conserved Domains (2) summary
      pfam00001
      Location:55310
      7tm_1; 7 transmembrane receptor (rhodopsin family)
      cl21561
      Location:47264
      7tm_4; Olfactory receptor

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      105617952..105647329 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036162055.1XP_036017948.1  cysteinyl leukotriene receptor 1 isoform X1

      Conserved Domains (1) summary
      cd15158
      Location:26308
      7tmA_CysLTR1; cysteinyl leukotriene receptor 1, member of the class A family of seven-transmembrane G protein-coupled receptors