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    9430015G10Rik RIKEN cDNA 9430015G10 gene [ Mus musculus (house mouse) ]

    Gene ID: 230996, updated on 27-Nov-2024

    Summary

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    Official Symbol
    9430015G10Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 9430015G10 geneprovided by MGI
    Primary source
    MGI:MGI:2444364
    See related
    Ensembl:ENSMUSG00000059939 AllianceGenome:MGI:2444364
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Is expressed in several structures, including blastocyst; early embryo; and extraembryonic component. Orthologous to human C1orf159 (chromosome 1 open reading frame 159). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in testis adult (RPKM 29.5), limb E14.5 (RPKM 19.8) and 28 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See 9430015G10Rik in Genome Data Viewer
    Location:
    4 E2; 4 88.33 cM
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (156194455..156211720)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (156109998..156127265)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene predicted gene 13648 Neighboring gene STARR-seq mESC enhancer starr_12282 Neighboring gene microRNA 200b Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:155444299-155444408 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:155444441-155444699 Neighboring gene predicted gene, 52714 Neighboring gene STARR-positive B cell enhancer ABC_E1672 Neighboring gene ring finger 223 Neighboring gene STARR-seq mESC enhancer starr_12288 Neighboring gene STARR-seq mESC enhancer starr_12289 Neighboring gene agrin Neighboring gene STARR-seq mESC enhancer starr_12290 Neighboring gene STARR-seq mESC enhancer starr_12291 Neighboring gene predicted gene, 46878

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Venus trap in the mouse embryo reveals distinct molecular dynamics underlying specification of first embryonic lineages. Dietrich JE, et al. EMBO Rep, 2015 Aug. PMID 26142281, Free PMC Article
    2. A molecular profile of a hematopoietic stem cell niche. Hackney JA, et al. Proc Natl Acad Sci U S A, 2002 Oct 1. PMID 12226475, Free PMC Article
    3. A mouse knockout library for secreted and transmembrane proteins. Tang T, et al. Nat Biotechnol, 2010 Jul. PMID 20562862
    4. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
    5. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C1orf159 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_145557.3 → NP_663532.2  uncharacterized protein C1orf159 homolog precursor

      See identical proteins and their annotated locations for NP_663532.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant (1). Both variants encode the same protein.
      Source sequence(s)
      AL928667, BQ830972, CA945382, CO803636
      Consensus CDS
      CCDS19059.1
      UniProtKB/TrEMBL
      A2ASP7, Q99KU2
      Related
      ENSMUSP00000072366.7, ENSMUST00000072554.13
      Conserved Domains (1) summary
      pfam14946
      Location:23 → 199
      DUF4501; Domain of unknown function (DUF4501)

    2. NM_177205.1 → NP_796179.1  uncharacterized protein C1orf159 homolog precursor

      See identical proteins and their annotated locations for NP_796179.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Both variants encode the same protein.
      Source sequence(s)
      AL928667, BY727027, CA945382, CO803636
      Consensus CDS
      CCDS19059.1
      UniProtKB/TrEMBL
      A2ASP7, Q99KU2
      Related
      ENSMUSP00000131817.2, ENSMUST00000169550.8
      Conserved Domains (1) summary
      pfam14946
      Location:23 → 199
      DUF4501; Domain of unknown function (DUF4501)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      156194455..156211720
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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