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    Defb23 defensin beta 23 [ Mus musculus (house mouse) ]

    Gene ID: 629114, updated on 27-Nov-2024

    Summary

    Official Symbol
    Defb23provided by MGI
    Official Full Name
    defensin beta 23provided by MGI
    Primary source
    MGI:MGI:3644405
    See related
    Ensembl:ENSMUSG00000074681 AllianceGenome:MGI:3644405
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EG629114
    Summary
    Orthologous to human DEFB129 (defensin beta 129). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward genital fat pad adult (RPKM 119.6) See more
    Orthologs
    NEW
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    Genomic context

    See Defb23 in Genome Data Viewer
    Location:
    2 H1; 2 75.08 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (152300914..152306540, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (152459055..152464620, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 6820408C15 gene Neighboring gene predicted gene, 27343 Neighboring gene predicted gene, 39960 Neighboring gene ribosomal protein L7A pseudogene Neighboring gene STARR-seq mESC enhancer starr_06062 Neighboring gene defensin beta 20

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General protein information

    Preferred Names
    beta-defensin 129
    Names
    beta-defensin 23

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001037933.3NP_001033022.1  beta-defensin 129 precursor

      See identical proteins and their annotated locations for NP_001033022.1

      Status: VALIDATED

      Source sequence(s)
      AL844517
      Consensus CDS
      CCDS16886.1
      UniProtKB/TrEMBL
      Q30KP0
      Related
      ENSMUSP00000096812.3, ENSMUST00000099206.3
      Conserved Domains (1) summary
      pfam13841
      Location:2654
      Defensin_beta_2; Beta defensin

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      152300914..152306540 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)