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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001104586.4 → NP_001098056.1 calcium-responsive transcription factor isoform 1
See identical proteins and their annotated locations for NP_001098056.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1). Variants 1, 2, 6 and 7 encode the same isoform (1).
- Source sequence(s)
-
AC010900, AF454946, BC021999
- Consensus CDS
-
CCDS42801.1
- UniProtKB/Swiss-Prot
- B4E1W7, G3V1K7, Q8N187, Q8ND29, Q8WXC0, Q96J78, Q96Q38, Q96Q39, Q9H712
- UniProtKB/TrEMBL
-
B7ZAW7
- Related
- ENSP00000384006.2, ENST00000402905.7
- Conserved Domains (1) summary
-
- pfam15299
Location:253 → 483
- ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8
-
NM_001282910.3 → NP_001269839.1 calcium-responsive transcription factor isoform 2
See identical proteins and their annotated locations for NP_001269839.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) lacks an in-frame exon in the coding region, compared to variant 1. The resulting isoform (2) lacks an internal segment, compared to isoform 1. Variants 3 and 4 encode the same isoform (2).
- Source sequence(s)
-
AC010900, BC021999
- Consensus CDS
-
CCDS63091.1
- UniProtKB/TrEMBL
-
B7ZAW7
- Related
- ENSP00000396221.1, ENST00000428585.5
- Conserved Domains (1) summary
-
- pfam15299
Location:177 → 407
- ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8
-
NM_001282911.3 → NP_001269840.1 calcium-responsive transcription factor isoform 2
See identical proteins and their annotated locations for NP_001269840.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) has an additional exon in the 5' UTR and lacks an in-frame exon in the coding region, compared to variant 1. The resulting isoform (2) lacks an internal segment, compared to isoform 1. Variants 3 and 4 encode the same isoform (2).
- Source sequence(s)
-
AC010900, AF454946, AK316432, BC021999
- Consensus CDS
-
CCDS63091.1
- UniProtKB/TrEMBL
-
B7ZAW7
- Related
- ENSP00000316224.9, ENST00000320443.12
- Conserved Domains (1) summary
-
- pfam15299
Location:177 → 407
- ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8
-
NM_001282912.3 → NP_001269841.1 calcium-responsive transcription factor isoform 3
See identical proteins and their annotated locations for NP_001269841.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) lacks two consecutive internal exons, which results in an alternate upstream start codon, compared to variant 1. The resulting isoform (3) is shorter and has a distinct N-terminus, compared to isoform 1.
- Source sequence(s)
-
AC010900, AF454946, AK295499, BC021999
- UniProtKB/TrEMBL
- B4DIA7, B7ZAW7
- Related
- ENSP00000416160.1, ENST00000414439.5
- Conserved Domains (1) summary
-
- pfam15299
Location:165 → 395
- ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8
-
NM_001322427.3 → NP_001309356.1 calcium-responsive transcription factor isoform 1
Status: VALIDATED
- Source sequence(s)
-
AB053309, AB053310, AC010900, AY032876, BC021999
- Consensus CDS
-
CCDS42801.1
- UniProtKB/Swiss-Prot
- B4E1W7, G3V1K7, Q8N187, Q8ND29, Q8WXC0, Q96J78, Q96Q38, Q96Q39, Q9H712
- UniProtKB/TrEMBL
-
B7ZAW7
- Conserved Domains (1) summary
-
- pfam15299
Location:253 → 483
- ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8
-
NM_001322428.3 → NP_001309357.1 calcium-responsive transcription factor isoform 1
Status: VALIDATED
- Source sequence(s)
-
AB053309, AC010900, AK316432, AY032876
- Consensus CDS
-
CCDS42801.1
- UniProtKB/Swiss-Prot
- B4E1W7, G3V1K7, Q8N187, Q8ND29, Q8WXC0, Q96J78, Q96Q38, Q96Q39, Q9H712
- UniProtKB/TrEMBL
-
B7ZAW7
- Conserved Domains (1) summary
-
- pfam15299
Location:253 → 483
- ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8
-
NM_001322429.3 → NP_001309358.1 calcium-responsive transcription factor isoform 4
Status: VALIDATED
- Source sequence(s)
-
AC010900, AK295499, AL834188, AY032876
- UniProtKB/TrEMBL
-
B7ZAW7
- Conserved Domains (1) summary
-
- pfam15299
Location:241 → 471
- ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8
-
NM_001352676.2 → NP_001339605.1 calcium-responsive transcription factor isoform 6
Status: VALIDATED
- Source sequence(s)
-
AC010900
- UniProtKB/TrEMBL
-
B7ZAW7
- Conserved Domains (1) summary
-
- pfam15299
Location:67 → 297
- ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8
-
NM_001352677.2 → NP_001339606.1 calcium-responsive transcription factor isoform 7
Status: VALIDATED
- Source sequence(s)
-
AC010900
- Conserved Domains (1) summary
-
- pfam15299
Location:151 → 381
- ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8
-
NM_001352678.2 → NP_001339607.1 calcium-responsive transcription factor isoform 8
Status: VALIDATED
- Source sequence(s)
-
AC010900
- Conserved Domains (1) summary
-
- pfam15299
Location:1 → 139
- ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8
-
NM_001352679.2 → NP_001339608.1 calcium-responsive transcription factor isoform 8
Status: VALIDATED
- Source sequence(s)
-
AC010900
- Conserved Domains (1) summary
-
- pfam15299
Location:1 → 139
- ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8
-
NM_024744.17 → NP_079020.13 calcium-responsive transcription factor isoform 1
See identical proteins and their annotated locations for NP_079020.13
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) has an alternate splice site and an additional exon in the 5' UTR, compared to variant 1. Variants 1, 2, 6 and 7 encode the same isoform (1).
- Source sequence(s)
-
AB053309, AC010900, BC021999, DA405623
- Consensus CDS
-
CCDS42801.1
- UniProtKB/Swiss-Prot
- B4E1W7, G3V1K7, Q8N187, Q8ND29, Q8WXC0, Q96J78, Q96Q38, Q96Q39, Q9H712
- UniProtKB/TrEMBL
-
B7ZAW7
- Related
- ENSP00000414644.1, ENST00000438828.4
- Conserved Domains (1) summary
-
- pfam15299
Location:253 → 483
- ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8
RNA
-
NR_136330.3 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC010900, AL834188, AY032876
-
NR_136331.3 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AB053309, AC010900, AK299366, AY032876, BC021999
-
NR_148033.2 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC010900
-
NR_148034.2 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC010900
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000002.12 Reference GRCh38.p14 Primary Assembly
- Range
-
202912275..202988263
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047445855.1 → XP_047301811.1 calcium-responsive transcription factor isoform X1
- UniProtKB/TrEMBL
-
F8WC01
- Related
- ENSP00000392274.1, ENST00000422368.5
-
XM_047445856.1 → XP_047301812.1 calcium-responsive transcription factor isoform X2
- UniProtKB/TrEMBL
-
F8WC01
RNA
-
XR_007081622.1 RNA Sequence
-
XR_007081643.1 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060926.1 Alternate T2T-CHM13v2.0
- Range
-
203393728..203469790
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054343966.1 → XP_054199941.1 calcium-responsive transcription factor isoform X3
- UniProtKB/Swiss-Prot
- B4E1W7, G3V1K7, Q8N187, Q8ND29, Q8WXC0, Q96J78, Q96Q38, Q96Q39, Q9H712
- UniProtKB/TrEMBL
-
B7ZAW7
-
XM_054343965.1 → XP_054199940.1 calcium-responsive transcription factor isoform X3
- UniProtKB/Swiss-Prot
- B4E1W7, G3V1K7, Q8N187, Q8ND29, Q8WXC0, Q96J78, Q96Q38, Q96Q39, Q9H712
- UniProtKB/TrEMBL
-
B7ZAW7
-
XM_054343977.1 → XP_054199952.1 calcium-responsive transcription factor isoform X9
-
XM_054343973.1 → XP_054199948.1 calcium-responsive transcription factor isoform X6
- UniProtKB/TrEMBL
-
B7ZAW7
-
XM_054343967.1 → XP_054199942.1 calcium-responsive transcription factor isoform X3
- UniProtKB/Swiss-Prot
- B4E1W7, G3V1K7, Q8N187, Q8ND29, Q8WXC0, Q96J78, Q96Q38, Q96Q39, Q9H712
- UniProtKB/TrEMBL
-
B7ZAW7
-
XM_054343963.1 → XP_054199938.1 calcium-responsive transcription factor isoform X3
- UniProtKB/Swiss-Prot
- B4E1W7, G3V1K7, Q8N187, Q8ND29, Q8WXC0, Q96J78, Q96Q38, Q96Q39, Q9H712
- UniProtKB/TrEMBL
-
B7ZAW7
-
XM_054343969.1 → XP_054199944.1 calcium-responsive transcription factor isoform X3
- UniProtKB/Swiss-Prot
- B4E1W7, G3V1K7, Q8N187, Q8ND29, Q8WXC0, Q96J78, Q96Q38, Q96Q39, Q9H712
- UniProtKB/TrEMBL
-
B7ZAW7
-
XM_054343964.1 → XP_054199939.1 calcium-responsive transcription factor isoform X3
- UniProtKB/Swiss-Prot
- B4E1W7, G3V1K7, Q8N187, Q8ND29, Q8WXC0, Q96J78, Q96Q38, Q96Q39, Q9H712
- UniProtKB/TrEMBL
-
B7ZAW7
-
XM_054343971.1 → XP_054199946.1 calcium-responsive transcription factor isoform X4
- UniProtKB/TrEMBL
-
B7ZAW7
-
XM_054343978.1 → XP_054199953.1 calcium-responsive transcription factor isoform X10
-
XM_054343974.1 → XP_054199949.1 calcium-responsive transcription factor isoform X7
- UniProtKB/TrEMBL
- B4DIA7, B7ZAW7
-
XM_054343968.1 → XP_054199943.1 calcium-responsive transcription factor isoform X3
- UniProtKB/Swiss-Prot
- B4E1W7, G3V1K7, Q8N187, Q8ND29, Q8WXC0, Q96J78, Q96Q38, Q96Q39, Q9H712
- UniProtKB/TrEMBL
-
B7ZAW7
-
XM_054343970.1 → XP_054199945.1 calcium-responsive transcription factor isoform X4
- UniProtKB/TrEMBL
-
B7ZAW7
-
XM_054343980.1 → XP_054199955.1 calcium-responsive transcription factor isoform X1
- UniProtKB/TrEMBL
-
F8WC01
-
XM_054343983.1 → XP_054199958.1 calcium-responsive transcription factor isoform X2
- UniProtKB/TrEMBL
-
F8WC01
-
XM_054343962.1 → XP_054199937.1 calcium-responsive transcription factor isoform X3
- UniProtKB/Swiss-Prot
- B4E1W7, G3V1K7, Q8N187, Q8ND29, Q8WXC0, Q96J78, Q96Q38, Q96Q39, Q9H712
- UniProtKB/TrEMBL
-
B7ZAW7
-
XM_054343972.1 → XP_054199947.1 calcium-responsive transcription factor isoform X5
- UniProtKB/TrEMBL
-
B7ZAW7
-
XM_054343975.1 → XP_054199950.1 calcium-responsive transcription factor isoform X8
- UniProtKB/TrEMBL
- B7ZAW7, C9JI92
-
XM_054343979.1 → XP_054199954.1 calcium-responsive transcription factor isoform X11
-
XM_054343976.1 → XP_054199951.1 calcium-responsive transcription factor isoform X8
- UniProtKB/TrEMBL
- B7ZAW7, C9JI92
-
XM_054343982.1 → XP_054199957.1 calcium-responsive transcription factor isoform X12
-
XM_054343981.1 → XP_054199956.1 calcium-responsive transcription factor isoform X12
RNA
-
XR_008486520.1 RNA Sequence
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_001322430.1: Suppressed sequence
- Description
- NM_001322430.1: This RefSeq was removed because currently there is support for the transcript but not for the protein.