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    TFAMP1 transcription factor A, mitochondrial pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 260341, updated on 10-Dec-2024

    Summary

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    Official Symbol
    TFAMP1provided by HGNC
    Official Full Name
    transcription factor A, mitochondrial pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:11636
    See related
    AllianceGenome:HGNC:11636
    Gene type
    pseudo
    RefSeq status
    PROVISIONAL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    MTTF1; TCF6L1
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    Genomic context

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    See TFAMP1 in Genome Data Viewer
    Location:
    7p22.3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (1614470..1616692)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (1726977..1729199)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (1654106..1656328)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:1609398-1609966 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17861 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25496 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25497 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:1615363-1616185 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:1616186-1617008 Neighboring gene PSMG3 antisense RNA 1 (head to head) Neighboring gene uncharacterized LOC105375123 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25498 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:1647655-1648186 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:1648187-1648719 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:1648720-1649251 Neighboring gene uncharacterized LOC105375303 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:1688785-1689292 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:1708637-1709344 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:1709345-1710051 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:1710052-1710758 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:1710759-1711465 Neighboring gene extracellular leucine rich repeat and fibronectin type III domain containing 1 Neighboring gene lncRNA radiation induced regulator of PLK1 and RAD51

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Smaller isoform of human mitochondrial transcription factor 1: its wide distribution and production by alternative splicing. Tominaga K, et al. Biochem Biophys Res Commun, 1993 Jul 15. PMID 8333869
    2. Similarity of human mitochondrial transcription factor 1 to high mobility group proteins. Parisi MA, et al. Science, 1991 May 17. PMID 2035027
    3. Human mitochondrial transcription factor A (mtTFA): gene structure and characterization of related pseudogenes. Reyes A, et al. Gene, 2002 May 29. PMID 12095695
    4. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. Dias Neto E, et al. Proc Natl Acad Sci U S A, 2000 Mar 28. PMID 10737800, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • processed pseudogene mtTFA 1
    • transcription factor 6-like 1 (mitochondrial transcription factor 1-like)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_001288.1 RNA Sequence

      Status: PROVISIONAL

      Source sequence(s)
      AJ320516

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      1614470..1616692
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      1726977..1729199
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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