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    SDHAP3 SDHA pseudogene 3 [ Homo sapiens (human) ]

    Gene ID: 728609, updated on 10-Dec-2024

    Summary

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    Official Symbol
    SDHAP3provided by HGNC
    Official Full Name
    SDHA pseudogene 3provided by HGNC
    Primary source
    HGNC:HGNC:18781
    See related
    Ensembl:ENSG00000291079 AllianceGenome:HGNC:18781
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    SDHAL; SDHACL
    Expression
    Ubiquitous expression in heart (RPKM 17.8), duodenum (RPKM 11.8) and 25 other tissues See more
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    Genomic context

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    See SDHAP3 in Genome Data Viewer
    Location:
    5p15.33
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (1571957..1594531, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (1485931..1508537, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (1572072..1594646, complement)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901161 Neighboring gene uncharacterized LOC107986397 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1550004-1550504 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1565824-1566805 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1575932-1576432 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1576433-1576933 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1592875-1593376 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1593377-1593876 Neighboring gene Sharpr-MPRA regulatory region 3968 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1603671-1604172 Neighboring gene PDCD6 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1607451-1607950 Neighboring gene serine/threonine-protein phosphatase 4 regulatory subunit 2-like Neighboring gene uncharacterized LOC112267946

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Genome-wide association study identifies multiple susceptibility loci for pancreatic cancer. Wolpin BM, et al. Nat Genet, 2014 Sep. PMID 25086665, Free PMC Article
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    Genome-wide association study identifies multiple susceptibility loci for pancreatic cancer.
    EBI GWAS Catalog

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • SDHA C-terminal like
    • succinate dehydrogenase complex flavoprotein subunit A pseudogene 3
    • succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 3

    Clone Names

    • MGC179707

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_003263.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC091849
      Related
      ENST00000721082.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      1571957..1594531 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      1485931..1508537 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
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