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    Lce1j late cornified envelope 1J [ Mus musculus (house mouse) ]

    Gene ID: 545547, updated on 27-Nov-2024

    Summary

    Official Symbol
    Lce1jprovided by MGI
    Official Full Name
    late cornified envelope 1Jprovided by MGI
    Primary source
    MGI:MGI:3702532
    See related
    Ensembl:ENSMUSG00000068887 AllianceGenome:MGI:3702532
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Sprrl8
    Expression
    Restricted expression toward stomach adult (RPKM 32.3) See more
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    Genomic context

    See Lce1j in Genome Data Viewer
    Location:
    3 F1; 3 40.14 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (92696151..92697821, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (92788844..92790514, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene late cornified envelope 1H Neighboring gene late cornified envelope 1I Neighboring gene late cornified envelope 1K Neighboring gene STARR-seq mESC enhancer starr_08315 Neighboring gene keratinocyte expressed, proline-rich

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    is_active_in cellular_component  

    General protein information

    Preferred Names
    late cornified envelope 1J
    Names
    small proline rich-like 8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001281499.1 → NP_001268428.1  late cornified envelope 1J

      See identical proteins and their annotated locations for NP_001268428.1

      Status: VALIDATED

      Source sequence(s)
      AC127247, W18229
      Consensus CDS
      CCDS59647.1
      UniProtKB/TrEMBL
      D3YUU5
      Related
      ENSMUSP00000140507.2, ENSMUST00000186525.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      92696151..92697821 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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