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    ymfN chimeric replication protein/phage terminase YmfN [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945708, updated on 19-Sep-2024

    Summary

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    Official Symbol
    ymfN
    Official Full Name
    chimeric replication protein/phage terminase YmfN
    Primary source
    ECOCYC:G6593
    Locus tag
    b1149
    See related
    ASAP:ABE-0003865
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1135
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    Genomic context

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    Sequence:
    NC_000913.3 (1204170..1205537)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative DNA-binding transcriptional regulator YmfT Neighboring gene uncharacterized protein YmfL Neighboring gene cell division inhibitor YmfM Neighboring gene pseudo Neighboring gene pseudo Neighboring gene IPR020297 domain-containing protein YmfR Neighboring gene protein BeeE Neighboring gene pseudo Neighboring gene DUF2313 domain-containing protein YmfQ

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of the lambdoid prophage element e14 in the E. coli K-12 genome. Mehta P, et al. BMC Microbiol, 2004 Jan 20. PMID 14733619, Free PMC Article
    2. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
    3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
    5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    chimeric replication protein/phage terminase YmfN

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1204170..1205537
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_009518764.1 chimeric replication protein/phage terminase YmfN [Escherichia coli str. K-12 substr. MG1655]

      Status: PROVISIONAL

      Conserved Domains (2) summary
      COG4626
      Location:79 → 454
      YmfN; Phage terminase-like protein, large subunit, contains N-terminal HTH domain [Mobilome: prophages, transposons]
      pfam13730
      Location:16 → 70
      HTH_36; Helix-turn-helix domain
    Nucleotide Protein
    Heading Accession and Version

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