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    RGCC regulator of cell cycle [ Homo sapiens (human) ]

    Gene ID: 28984, updated on 27-Nov-2024

    Summary

    Official Symbol
    RGCCprovided by HGNC
    Official Full Name
    regulator of cell cycleprovided by HGNC
    Primary source
    HGNC:HGNC:20369
    See related
    Ensembl:ENSG00000102760 MIM:610077; AllianceGenome:HGNC:20369
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    RGC32; RGC-32; C13orf15; bA157L14.2
    Summary
    This gene is thought to regulate cell cycle progression. It is induced by p53 in response to DNA damage, or by sublytic levels of complement system proteins that result in activation of the cell cycle. The encoded protein localizes to the cytoplasm during interphase and to centrosomes during mitosis. The protein forms a complex with polo-like kinase 1. The protein also translocates to the nucleus in response to treatment with complement system proteins, and can associate with and increase the kinase activity of cell division cycle 2 protein. In different assays and cell types, overexpression of this protein has been shown to activate or suppress cell cycle progression. [provided by RefSeq, Jul 2008]
    Expression
    Biased expression in bone marrow (RPKM 99.1), lung (RPKM 65.2) and 11 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See RGCC in Genome Data Viewer
    Location:
    13q14.11
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (41457550..41470871)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (40676691..40689978)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (42031686..42045007)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:42031872-42032549 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7629 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7630 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7631 Neighboring gene ReSE screen-validated silencer GRCh37_chr13:42038640-42038854 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7632 Neighboring gene olfactory receptor family 7 subfamily E member 155 pseudogene Neighboring gene olfactory receptor family 7 subfamily E member 37 pseudogene Neighboring gene uncharacterized LOC105370174 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_32874 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr13:42114123-42114643 Neighboring gene uncharacterized LOC105370175 Neighboring gene ReSE screen-validated silencer GRCh37_chr13:42127997-42128188 Neighboring gene microRNA 5006 Neighboring gene von Willebrand factor A domain containing 8

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Phenotypes

    EBI GWAS Catalog

    Description
    Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
    EBI GWAS Catalog
    Meta-analysis of genome-wide association studies identifies six new Loci for serum calcium concentrations.
    EBI GWAS Catalog

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • KIAA0564, MGC87338

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables R-SMAD binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein kinase activator activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables protein kinase activator activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables protein kinase binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables protein kinase binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein kinase binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Process Evidence Code Pubs
    involved_in cellular response to hypoxia IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in complement activation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in fibroblast activation ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in negative regulation of angiogenesis IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in negative regulation of blood vessel endothelial cell migration IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in negative regulation of cell population proliferation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in negative regulation of cell-cell adhesion mediated by cadherin IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in negative regulation of cytokine production IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in negative regulation of endothelial cell proliferation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in negative regulation of exit from mitosis IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in negative regulation of fibroblast growth factor production IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in negative regulation of mitotic cell cycle phase transition IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in positive regulation of DNA biosynthetic process ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in positive regulation of DNA-binding transcription factor activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of G1/S transition of mitotic cell cycle IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of collagen biosynthetic process IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in positive regulation of cyclin-dependent protein serine/threonine kinase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in positive regulation of cyclin-dependent protein serine/threonine kinase activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of cytokine production IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of endothelial cell apoptotic process IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in positive regulation of epithelial to mesenchymal transition IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in positive regulation of epithelial to mesenchymal transition IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of extracellular matrix assembly IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in positive regulation of extracellular matrix constituent secretion IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in positive regulation of gene expression IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in positive regulation of mitotic nuclear division IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of stress fiber assembly IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in centrosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytosol TAS
    Traceable Author Statement
    more info
     
    located_in nucleolus IDA
    Inferred from Direct Assay
    more info
     
    located_in nucleoplasm IDA
    Inferred from Direct Assay
    more info
     
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    regulator of cell cycle RGCC
    Names
    response gene to complement 32 protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_014059.3NP_054778.2  regulator of cell cycle RGCC

      See identical proteins and their annotated locations for NP_054778.2

      Status: REVIEWED

      Source sequence(s)
      BC066334, DB451897
      Consensus CDS
      CCDS41880.1
      UniProtKB/Swiss-Prot
      Q6NZ48, Q9H4X1, Q9UL69
      Related
      ENSP00000368664.3, ENST00000379359.4
      Conserved Domains (1) summary
      pfam15151
      Location:26137
      RGCC; Response gene to complement 32 protein family

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

      Range
      41457550..41470871
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_047430282.1XP_047286238.1  regulator of cell cycle RGCC isoform X1

    RNA

    1. XR_941565.2 RNA Sequence

    2. XR_007063677.1 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      40676691..40689978
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054374480.1XP_054230455.1  regulator of cell cycle RGCC isoform X1

    RNA

    1. XR_008488757.1 RNA Sequence

    2. XR_008488756.1 RNA Sequence