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    Pacrgl PARK2 co-regulated-like [ Mus musculus (house mouse) ]

    Gene ID: 66768, updated on 9-Dec-2024

    Summary

    Official Symbol
    Pacrglprovided by MGI
    Official Full Name
    PARK2 co-regulated-likeprovided by MGI
    Primary source
    MGI:MGI:1914018
    See related
    Ensembl:ENSMUSG00000029089 AllianceGenome:MGI:1914018
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4933428G09Rik
    Summary
    Orthologous to human PACRGL (parkin coregulated like). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Broad expression in testis adult (RPKM 12.7), CNS E11.5 (RPKM 4.1) and 21 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Pacrgl in Genome Data Viewer
    Location:
    5 B3; 5 26.25 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (48529736..48546187)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (48372392..48388756)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene calmodulin 2 pseudogene Neighboring gene STARR-seq mESC enhancer starr_13022 Neighboring gene STARR-seq mESC enhancer starr_13023 Neighboring gene STARR-seq mESC enhancer starr_13024 Neighboring gene slit guidance ligand 2 Neighboring gene microRNA 218-1 Neighboring gene STARR-seq mESC enhancer starr_13026 Neighboring gene STARR-positive B cell enhancer ABC_E4755 Neighboring gene RIKEN cDNA 5730480H06 gene Neighboring gene Kv channel interacting protein 4 Neighboring gene predicted gene, 52772

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025755.4NP_080031.1  PACRG-like protein

      See identical proteins and their annotated locations for NP_080031.1

      Status: VALIDATED

      Source sequence(s)
      AC101004
      Consensus CDS
      CCDS19281.1
      UniProtKB/Swiss-Prot
      Q9D3X5
      Related
      ENSMUSP00000030968.3, ENSMUST00000030968.7
      Conserved Domains (1) summary
      pfam10274
      Location:78245
      ParcG; Parkin co-regulated protein

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      48529736..48546187
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)