U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LINC01479 long intergenic non-protein coding RNA 1479 [ Homo sapiens (human) ]

    Gene ID: 101927922, updated on 10-Dec-2024

    Summary

    Official Symbol
    LINC01479provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1479provided by HGNC
    Primary source
    HGNC:HGNC:51123
    See related
    Ensembl:ENSG00000255772 AllianceGenome:HGNC:51123
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    HRAT39
    Expression
    Restricted expression toward heart (RPKM 2.6) See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LINC01479 in Genome Data Viewer
    Location:
    12q15
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (67929235..67970017)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (67908803..67949606)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (68323015..68363797)

    Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902958 Neighboring gene long intergenic non-protein coding RNA 2421 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr12:68160813-68161536 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr12:68166311-68166833 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr12:68221514-68222713 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:68233883-68234382 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:68270550-68271050 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:68271051-68271551 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:68293706-68294442 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:68294443-68295177 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:68313920-68314420 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:68314421-68314921 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr12:68374855-68376054 Neighboring gene IFNG regulatory antisense RNA 1 Neighboring gene ribosomal protein L39 pseudogene 28 Neighboring gene heterogeneous nuclear ribonucleoprotein A1 pseudogene 70

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_120456.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BM850770, BX107064
      Related
      ENST00000546170.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

      Range
      67929235..67970017
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060936.1 Alternate T2T-CHM13v2.0

      Range
      67908803..67949606
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)