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    Vmn2r17 vomeronasal 2, receptor 17 [ Mus musculus (house mouse) ]

    Gene ID: 384221, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Vmn2r17provided by MGI
    Official Full Name
    vomeronasal 2, receptor 17provided by MGI
    Primary source
    MGI:MGI:3647193
    See related
    Ensembl:ENSMUSG00000091879 AllianceGenome:MGI:3647193
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EG384221
    Summary
    Predicted to enable G protein-coupled receptor activity. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See Vmn2r17 in Genome Data Viewer
    Location:
    5 F; 5 53.24 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (109567879..109601253)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (109420013..109453387)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene vomeronasal 2, receptor 16 Neighboring gene vomeronasal 2, receptor 84 pseudogene Neighboring gene predicted gene, 50598 Neighboring gene dual specificity phosphatase 14 pseudogene Neighboring gene ARP1 actin-related protein 1A, centractin alpha pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. V2R gene families degenerated in primates, dog and cow, but expanded in opossum. Young JM, et al. Trends Genet, 2007 May. PMID 17382427
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables G protein-coupled receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    vomeronasal receptor Vmn2r17

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001104628.1 → NP_001098098.1  vomeronasal receptor Vmn2r17 isofrom1 precursor

      Status: VALIDATED

      Source sequence(s)
      AC129943
      Consensus CDS
      CCDS51603.1
      UniProtKB/TrEMBL
      A0A3B2W7F5, E9PYF5
      Related
      ENSMUSP00000131450.2, ENSMUST00000171841.3
      Conserved Domains (3) summary
      cd06365
      Location:40 → 500
      PBP1_Pheromone_receptor; Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily
      pfam00003
      Location:596 → 830
      7tm_3; 7 transmembrane sweet-taste receptor of 3 GCPR
      pfam07562
      Location:509 → 561
      NCD3G; Nine Cysteines Domain of family 3 GPCR

    2. NM_001385190.1 → NP_001372119.1  vomeronasal receptor Vmn2r17 isoform 2 precursor

      Status: VALIDATED

      Source sequence(s)
      AC129943
      UniProtKB/TrEMBL
      A0A3B2W3R2, A0A3B2W871
      Related
      ENSMUSP00000156890.2, ENSMUST00000233724.2
      Conserved Domains (3) summary
      cd15283
      Location:581 → 832
      7tmC_V2R_pheromone; vomeronasal type-2 pheromone receptors, member of the class C family of seven-transmembrane G protein-coupled receptors
      cd06365
      Location:45 → 500
      PBP1_pheromone_receptor; Ligand-binding domain of the V2R pheromone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily
      pfam07562
      Location:508 → 561
      NCD3G; Nine Cysteines Domain of family 3 GPCR

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      109567879..109601253
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030254650.1 → XP_030110510.1  vomeronasal receptor Vmn2r17 isoform X3

      UniProtKB/TrEMBL
      A0A3B2W3R2
      Conserved Domains (2) summary
      cd15283
      Location:541 → 792
      7tmC_V2R_pheromone; vomeronasal type-2 pheromone receptors, member of the class C family of seven-transmembrane G protein-coupled receptors
      cd06365
      Location:45 → 500
      PBP1_pheromone_receptor; Ligand-binding domain of the V2R pheromone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily

    2. XM_030254648.1 → XP_030110508.1  vomeronasal receptor Vmn2r17 isoform X2

      UniProtKB/TrEMBL
      A0A3B2W3R2
      Conserved Domains (3) summary
      cd15283
      Location:582 → 833
      7tmC_V2R_pheromone; vomeronasal type-2 pheromone receptors, member of the class C family of seven-transmembrane G protein-coupled receptors
      pfam07562
      Location:509 → 562
      NCD3G; Nine Cysteines Domain of family 3 GPCR
      cd06365
      Location:45 → 500
      PBP1_pheromone_receptor; Ligand-binding domain of the V2R pheromone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily

    3. XM_030254647.1 → XP_030110507.1  vomeronasal receptor Vmn2r17 isoform X1

      UniProtKB/TrEMBL
      A0A3B2W3R2
      Conserved Domains (3) summary
      cd15283
      Location:583 → 834
      7tmC_V2R_pheromone; vomeronasal type-2 pheromone receptors, member of the class C family of seven-transmembrane G protein-coupled receptors
      pfam07562
      Location:510 → 563
      NCD3G; Nine Cysteines Domain of family 3 GPCR
      cd06365
      Location:45 → 500
      PBP1_pheromone_receptor; Ligand-binding domain of the V2R pheromone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily

    4. XM_036165259.1 → XP_036021152.1  vomeronasal receptor Vmn2r17 isoform X4

      UniProtKB/TrEMBL
      A0A3B2W3R2
      Conserved Domains (3) summary
      cd15283
      Location:506 → 757
      7tmC_V2R_pheromone; vomeronasal type-2 pheromone receptors, member of the class C family of seven-transmembrane G protein-coupled receptors
      pfam07562
      Location:433 → 486
      NCD3G; Nine Cysteines Domain of family 3 GPCR
      cl10011
      Location:45 → 442
      Periplasmic_Binding_Protein_type1; Type 1 periplasmic binding fold superfamily
    Nucleotide Protein
    Heading Accession and Version

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