U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Cimap2 ciliary microtubule associated protein 2 [ Mus musculus (house mouse) ]

    Gene ID: 242602, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Cimap2provided by MGI
    Official Full Name
    ciliary microtubule associated protein 2provided by MGI
    Primary source
    MGI:MGI:2681853
    See related
    Ensembl:ENSMUSG00000054362 AllianceGenome:MGI:2681853
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Lexm
    Summary
    Orthologous to human CIMAP2 (ciliary microtubule associated protein 2). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward testis adult (RPKM 13.2) See more
    Orthologs
    human all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Cimap2 in Genome Data Viewer
    Location:
    4 C7; 4 49.67 cM
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (106448105..106474594, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (106590908..106617397, complement)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 2700068H02 gene Neighboring gene STARR-positive B cell enhancer ABC_E10243 Neighboring gene 24-dehydrocholesterol reductase Neighboring gene STARR-seq mESC enhancer starr_10995 Neighboring gene STARR-seq mESC enhancer starr_10996 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:106287642-106287893 Neighboring gene STARR-positive B cell enhancer ABC_E10244 Neighboring gene tetratricopeptide repeat domain 22 Neighboring gene STARR-positive B cell enhancer ABC_E2700 Neighboring gene prolyl-tRNA synthetase (mitochondrial)(putative)

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. USP7 represses lineage differentiation genes in mouse embryonic stem cells by both catalytic and noncatalytic activities. Liu C, et al. Sci Adv, 2023 May 19. PMID 37196079, Free PMC Article
    2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Variation

    Go to the top of the page Help

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Chemically induced (ENU) (1) 
    • Endonuclease-mediated (1) 
    • Targeted (2) 

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    Clone Names

    • MGC58608

    General protein information

    Go to the top of the page Help
    Preferred Names
    ciliary microtubule-associated protein 2
    Names
    lymphocyte expansion molecule

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_183182.4 → NP_899005.2  ciliary microtubule-associated protein 2

      See identical proteins and their annotated locations for NP_899005.2

      Status: VALIDATED

      Source sequence(s)
      AL929585
      Consensus CDS
      CCDS51252.1
      UniProtKB/Swiss-Prot
      A2AVQ4, A2AVQ5, Q7TPM4
      UniProtKB/TrEMBL
      A0A0F6T326
      Related
      ENSMUSP00000102400.2, ENSMUST00000106788.2

    RNA

    1. NR_149753.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL929585

    2. NR_189597.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL929585

    3. NR_189598.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL929585

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      106448105..106474594 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011240528.3 → XP_011238830.1  ciliary microtubule-associated protein 2 isoform X1

    2. XM_006503086.5 → XP_006503149.1  ciliary microtubule-associated protein 2 isoform X2

    3. XM_030253564.1 → XP_030109424.1  ciliary microtubule-associated protein 2 isoform X4

    4. XM_030253565.2 → XP_030109425.1  ciliary microtubule-associated protein 2 isoform X4

    5. XM_011240529.3 → XP_011238831.1  ciliary microtubule-associated protein 2 isoform X3

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A2AVQ5.1 GenPept UniProtKB/Swiss-Prot:A2AVQ5

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools