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    PIR pirin [ Sus scrofa (pig) ]

    Gene ID: 100514999, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PIRprovided by VGNC
    Official Full Name
    pirinprovided by VGNC
    Primary source
    VGNC:VGNC:98196
    See related
    Ensembl:ENSSSCG00000012136
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in spleen (RPKM 6.8), ovary (RPKM 5.0) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See PIR in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) X NC_010461.5 (11934157..12034629, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) X NC_010461.4 (12894760..12994430, complement)

    Chromosome X - NC_010461.5Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol glycan anchor biosynthesis class A Neighboring gene vascular endothelial growth factor D Neighboring gene BMX non-receptor tyrosine kinase Neighboring gene angiotensin converting enzyme 2 Neighboring gene uncharacterized LOC110257732

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables quercetin 2,3-dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in monocyte differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pirin

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010461.5 Reference Sscrofa11.1 Primary Assembly

      Range
      11934157..12034629 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005673448.3 → XP_005673505.1  pirin

      See identical proteins and their annotated locations for XP_005673505.1

      UniProtKB/TrEMBL
      A0A8D0T7L7, A0A8D1PLW6, K7GKW6, K7GMK3
      Related
      ENSSSCP00000029096.2, ENSSSCT00000034866.4
      Conserved Domains (1) summary
      COG1741
      Location:18 → 275
      YhaK; Redox-sensitive bicupin YhaK, pirin superfamily [General function prediction only]

    2. XM_005673447.3 → XP_005673504.1  pirin

      See identical proteins and their annotated locations for XP_005673504.1

      UniProtKB/TrEMBL
      A0A8D0T7L7, A0A8D1PLW6, K7GKW6, K7GMK3
      Conserved Domains (1) summary
      COG1741
      Location:18 → 275
      YhaK; Redox-sensitive bicupin YhaK, pirin superfamily [General function prediction only]

    3. XM_003134943.3 → XP_003134991.1  pirin

      See identical proteins and their annotated locations for XP_003134991.1

      UniProtKB/TrEMBL
      A0A8D0T7L7, A0A8D1PLW6, K7GKW6, K7GMK3
      Conserved Domains (1) summary
      COG1741
      Location:18 → 275
      YhaK; Redox-sensitive bicupin YhaK, pirin superfamily [General function prediction only]

    4. XM_013985919.1 → XP_013841373.1  pirin

      UniProtKB/TrEMBL
      A0A8D0T7L7, A0A8D1PLW6, K7GKW6, K7GMK3
      Conserved Domains (1) summary
      COG1741
      Location:18 → 275
      YhaK; Redox-sensitive bicupin YhaK, pirin superfamily [General function prediction only]

    5. XM_021080133.1 → XP_020935792.1  pirin

      UniProtKB/TrEMBL
      A0A8D0T7L7, A0A8D1PLW6, K7GKW6, K7GMK3
      Conserved Domains (1) summary
      COG1741
      Location:18 → 275
      YhaK; Redox-sensitive bicupin YhaK, pirin superfamily [General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

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