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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_029847.1 RefSeqGene
- Range
-
5096..68725
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001077700.3 → NP_001071168.2 mesoderm induction early response protein 1 isoform b
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks an alternate exon in the 5' coding region and uses an alternate upstream translation start site, compared to variant 1. The resulting isoform (b) has a longer and distinct N-terminus, compared to isoform a.
- Source sequence(s)
-
AK302061, AL500525, BM987758
- Consensus CDS
-
CCDS53326.1
- UniProtKB/Swiss-Prot
-
Q8N108
- Related
- ENSP00000383820.1, ENST00000401041.6
- Conserved Domains (2) summary
-
- cd11661
Location:341 → 385
- SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
- pfam01448
Location:235 → 284
- ELM2; ELM2 domain
-
NM_001077701.3 → NP_001071169.1 mesoderm induction early response protein 1 isoform c
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at an alternate start codon, compared to variant 1. The resulting isoform (c, also known as N3-beta) has a shorter and distinct N-terminus, compared to isoform a.
- Source sequence(s)
-
AF515446, AL500525, BM987758
- Consensus CDS
-
CCDS41348.1
- UniProtKB/Swiss-Prot
- C9JFD4, Q08AE0, Q32NC4, Q5T104, Q5TAD1, Q5TAD2, Q5TAD4, Q5TAD5, Q6AHY8, Q86TB4, Q8N108, Q8N156, Q8N161, Q8NC37, Q8NES4, Q8NES5, Q8NES6, Q8WWG2, Q9HCG2
- Related
- ENSP00000347514.3, ENST00000355356.3
- Conserved Domains (2) summary
-
- cd11661
Location:288 → 332
- SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
- pfam01448
Location:182 → 231
- ELM2; ELM2 domain
-
NM_001077702.3 → NP_001071170.2 mesoderm induction early response protein 1 isoform d
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) lacks an alternate segment in the 3' coding region, compared to variant 1. The resulting isoform (d) has a shorter and distinct C-terminus, compared to isoform a.
- Source sequence(s)
-
AF515448, AK302061, AL500525, BM987758
- Consensus CDS
-
CCDS53327.1
- UniProtKB/Swiss-Prot
-
Q8N108
- Related
- ENSP00000360055.1, ENST00000371016.5
- Conserved Domains (2) summary
-
- cd11661
Location:305 → 349
- SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
- pfam01448
Location:199 → 248
- ELM2; ELM2 domain
-
NM_001077703.3 → NP_001071171.2 mesoderm induction early response protein 1 isoform e
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) lacks an alternate exon in the 5' coding region, uses an alternate upstream translation start site, and lacks an alternate segment in the 3' coding region, compared to variant 1. The resulting isoform (e) has a longer and distinct N-terminus and a shorter and distinct C-terminus, compared to isoform a.
- Source sequence(s)
-
AK302061, AL500525, AY124187, BM987758
- Consensus CDS
-
CCDS53325.1
- UniProtKB/Swiss-Prot
-
Q8N108
- Related
- ENSP00000360053.1, ENST00000371014.5
- Conserved Domains (2) summary
-
- cd11661
Location:341 → 385
- SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
- pfam01448
Location:235 → 284
- ELM2; ELM2 domain
-
NM_001077704.3 → NP_001071172.1 mesoderm induction early response protein 1 isoform f
Status: REVIEWED
- Description
- Transcript Variant: This variant (6) differs in the 5' UTR, lacks a portion of the 5' coding region, initiates translation at an alternate start codon, and lacks an alternate segment in the 3' coding region, compared to variant 1. The resulting isoform (f, also known as N3-alpha), has shorter and distinct N- and C-termini, compared to isoform a.
- Source sequence(s)
-
AL500525, AY124188, BM987758
- Consensus CDS
-
CCDS41347.1
- UniProtKB/Swiss-Prot
-
Q8N108
- Related
- ENSP00000383821.3, ENST00000401042.7
- Conserved Domains (2) summary
-
- cd11661
Location:288 → 332
- SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
- pfam01448
Location:182 → 231
- ELM2; ELM2 domain
-
NM_001146110.2 → NP_001139582.1 mesoderm induction early response protein 1 isoform a
Status: REVIEWED
- Description
- Transcript Variant: This variant (10) uses an alternate splice site in the 5' UTR compared to variant 1. Both variants 1 and 10 encode the same isoform (a).
- Source sequence(s)
-
AK302061, AK307717, AL500525, BC108726, BM987758
- Consensus CDS
-
CCDS53329.1
- UniProtKB/Swiss-Prot
-
Q8N108
- Related
- ENSP00000350321.2, ENST00000357692.6
- Conserved Domains (2) summary
-
- cd11661
Location:305 → 349
- SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
- pfam01448
Location:199 → 248
- ELM2; ELM2 domain
-
NM_001146111.2 → NP_001139583.1 mesoderm induction early response protein 1 isoform g
Status: REVIEWED
- Description
- Transcript Variant: This variant (7) lacks an alternate segment in the 3' coding region, compared to variant 1. The resulting isoform (g) has a shorter and distinct C-terminus, compared to isoform a.
- Source sequence(s)
-
AK302061, AL500525, BC108726, BM987758
- Consensus CDS
-
CCDS53328.1
- UniProtKB/Swiss-Prot
-
Q8N108
- Related
- ENSP00000360057.3, ENST00000371018.7
- Conserved Domains (2) summary
-
- cd11661
Location:305 → 349
- SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
- pfam01448
Location:199 → 248
- ELM2; ELM2 domain
-
NM_001146112.2 → NP_001139584.1 mesoderm induction early response protein 1 isoform h
Status: REVIEWED
- Description
- Transcript Variant: This variant (8) lacks a portion of the 5' coding region and initiates translation at a downstream in-frame start codon, compared to variant 1. The resulting isoform (h) has a shorter N-terminus, compared to isoform a.
- Source sequence(s)
-
AF515446, AK302061, AL139216, AL500525, BM987758
- UniProtKB/Swiss-Prot
-
Q8N108
- Conserved Domains (2) summary
-
- cd11661
Location:261 → 305
- SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
- pfam01448
Location:155 → 204
- ELM2; ELM2 domain
-
NM_001146113.2 → NP_001139585.1 mesoderm induction early response protein 1 isoform i
Status: REVIEWED
- Description
- Transcript Variant: This variant (9) lacks two alternate exons in the 5' coding region, initiates translation at a downsteram in-frame start codon, and lacks an alternate segment in the 3' coding region, compared to variant 1. The resulting isoform (i) has a shorter N-terminus and a shorter and distinct C-terminus, compared to isoform a.
- Source sequence(s)
-
AK302061, AL500525, BC125217, BM987758
- Consensus CDS
-
CCDS53330.1
- UniProtKB/Swiss-Prot
-
Q8N108
- Related
- ENSP00000348253.6, ENST00000355977.10
- Conserved Domains (2) summary
-
- cd11661
Location:225 → 269
- SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
- pfam01448
Location:119 → 168
- ELM2; ELM2 domain
-
NM_001278215.2 → NP_001265144.1 mesoderm induction early response protein 1 isoform j
Status: REVIEWED
- Description
- Transcript Variant: This variant (11) lacks multiple 3' exons and its transcription extends past a splice site used in variant 1, resulting in a distinct 3' coding region and 3' UTR. The encoded isoform (j) has a shorter and distinct C-terminus, compared to isoform a.
- Source sequence(s)
-
AL139216, BC066898
- Consensus CDS
-
CCDS60163.1
- UniProtKB/Swiss-Prot
-
Q8N108
- Related
- ENSP00000360051.2, ENST00000371012.6
-
NM_001350530.2 → NP_001337459.1 mesoderm induction early response protein 1 isoform k
Status: REVIEWED
- Description
- Transcript Variant: This variant (12) contains an alternate exon in its 5' coding region, resulting in a shorter 5' UTR and the use of an alternate upstream translation start site, compared to variant 1. The resulting isoform (k) has a longer and distinct N-terminus, compared to isoform a
- Source sequence(s)
-
AF515448, AK302061, AL139216, AL500525, BM987758, CB998535
- Conserved Domains (2) summary
-
- cd11661
Location:378 → 422
- SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
- pfam01448
Location:272 → 321
- ELM2; ELM2 domain
-
NM_020948.4 → NP_065999.2 mesoderm induction early response protein 1 isoform a
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes isoform a. Both variants 1 and 10 encode the same isoform (a).
- Source sequence(s)
-
AF515448, AK302061, AL500525, BM987758
- Consensus CDS
-
CCDS53329.1
- UniProtKB/Swiss-Prot
-
Q8N108
- Conserved Domains (2) summary
-
- cd11661
Location:305 → 349
- SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
- pfam01448
Location:199 → 248
- ELM2; ELM2 domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000001.11 Reference GRCh38.p14 Primary Assembly
- Range
-
66924990..66988619
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017001923.2 → XP_016857412.1 mesoderm induction early response protein 1 isoform X4
-
XM_011541865.3 → XP_011540167.1 mesoderm induction early response protein 1 isoform X1
- Conserved Domains (3) summary
-
- smart00717
Location:365 → 410
- SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
- cd11661
Location:365 → 409
- SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
- pfam01448
Location:259 → 308
- ELM2; ELM2 domain
-
XM_047426266.1 → XP_047282222.1 mesoderm induction early response protein 1 isoform X10
-
XM_017001928.3 → XP_016857417.1 mesoderm induction early response protein 1 isoform X6
- UniProtKB/Swiss-Prot
-
Q8N108
- Conserved Domains (2) summary
-
- cd11661
Location:287 → 331
- SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
- pfam01448
Location:181 → 230
- ELM2; ELM2 domain
-
XM_047426256.1 → XP_047282212.1 mesoderm induction early response protein 1 isoform X3
-
XM_047426263.1 → XP_047282219.1 mesoderm induction early response protein 1 isoform X5
-
XM_047426255.1 → XP_047282211.1 mesoderm induction early response protein 1 isoform X3
-
XM_017001924.2 → XP_016857413.1 mesoderm induction early response protein 1 isoform X5
- UniProtKB/Swiss-Prot
-
Q8N108
- Conserved Domains (2) summary
-
- cd11661
Location:305 → 349
- SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
- pfam01448
Location:199 → 248
- ELM2; ELM2 domain
-
XM_017001919.2 → XP_016857408.1 mesoderm induction early response protein 1 isoform X2
- Conserved Domains (3) summary
-
- smart00717
Location:324 → 369
- SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
- cd11661
Location:324 → 368
- SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
- pfam01448
Location:218 → 267
- ELM2; ELM2 domain
-
XM_047426260.1 → XP_047282216.1 mesoderm induction early response protein 1 isoform X5
-
XM_017001931.2 → XP_016857420.1 mesoderm induction early response protein 1 isoform X8
- UniProtKB/Swiss-Prot
-
Q8N108
- Conserved Domains (2) summary
-
- cd11661
Location:261 → 305
- SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
- pfam01448
Location:155 → 204
- ELM2; ELM2 domain
-
XM_047426264.1 → XP_047282220.1 mesoderm induction early response protein 1 isoform X7
-
XM_017001927.2 → XP_016857416.1 mesoderm induction early response protein 1 isoform X6
- UniProtKB/Swiss-Prot
-
Q8N108
- Conserved Domains (2) summary
-
- cd11661
Location:287 → 331
- SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
- pfam01448
Location:181 → 230
- ELM2; ELM2 domain
-
XM_047426265.1 → XP_047282221.1 mesoderm induction early response protein 1 isoform X9
-
XM_017001920.2 → XP_016857409.1 mesoderm induction early response protein 1 isoform X2
- Conserved Domains (3) summary
-
- smart00717
Location:324 → 369
- SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
- cd11661
Location:324 → 368
- SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
- pfam01448
Location:218 → 267
- ELM2; ELM2 domain
-
XM_017001930.2 → XP_016857419.1 mesoderm induction early response protein 1 isoform X7
- Conserved Domains (2) summary
-
- cd11661
Location:287 → 331
- SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
- pfam01448
Location:181 → 230
- ELM2; ELM2 domain
-
XM_017001933.2 → XP_016857422.1 mesoderm induction early response protein 1 isoform X9
-
XM_017001934.2 → XP_016857423.1 mesoderm induction early response protein 1 isoform X9
RNA
-
XR_007062438.1 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060925.1 Alternate T2T-CHM13v2.0
- Range
-
66802518..66866111
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054337911.1 → XP_054193886.1 mesoderm induction early response protein 1 isoform X4
-
XM_054337908.1 → XP_054193883.1 mesoderm induction early response protein 1 isoform X1
-
XM_054337921.1 → XP_054193896.1 mesoderm induction early response protein 1 isoform X10
-
XM_054337914.1 → XP_054193889.1 mesoderm induction early response protein 1 isoform X6
-
XM_054337912.1 → XP_054193887.1 mesoderm induction early response protein 1 isoform X5
-
XM_054337913.1 → XP_054193888.1 mesoderm induction early response protein 1 isoform X5
-
XM_054337910.1 → XP_054193885.1 mesoderm induction early response protein 1 isoform X3
-
XM_054337909.1 → XP_054193884.1 mesoderm induction early response protein 1 isoform X2
-
XM_054337917.1 → XP_054193892.1 mesoderm induction early response protein 1 isoform X8
-
XM_054337920.1 → XP_054193895.1 mesoderm induction early response protein 1 isoform X2
-
XM_054337916.1 → XP_054193891.1 mesoderm induction early response protein 1 isoform X6
-
XM_054337915.1 → XP_054193890.1 mesoderm induction early response protein 1 isoform X7
-
XM_054337918.1 → XP_054193893.1 mesoderm induction early response protein 1 isoform X9
-
XM_054337919.1 → XP_054193894.1 mesoderm induction early response protein 1 isoform X9
RNA
-
XR_008486129.1 RNA Sequence