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    Slc22a13b solute carrier family 22 (organic cation transporter), member 13b [ Mus musculus (house mouse) ]

    Gene ID: 109280, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Slc22a13bprovided by MGI
    Official Full Name
    solute carrier family 22 (organic cation transporter), member 13bprovided by MGI
    Primary source
    MGI:MGI:1924762
    See related
    Ensembl:ENSMUSG00000092212 AllianceGenome:MGI:1924762
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Slc22a13b-ps; 9330176C04Rik
    Summary
    This locus is a duplication of the neighboring solute carrier family 22, member 13 gene. The locus contains a polymorphic nonsense mutation (dbSNP rs29642637). Consequently, the locus appears to be protein-coding in some strains and non-coding in other strains including C57BL/6. [provided by RefSeq, Feb 2010]
    Annotation information
    Note: Genetic polymorphisms result in both protein coding and non-coding alleles of this gene.
    Expression
    Biased expression in kidney adult (RPKM 42.5) and duodenum adult (RPKM 7.1) See more
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    Genomic context

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    See Slc22a13b in Genome Data Viewer
    Location:
    9 F3; 9 71.33 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (119049557..119060758, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (119220491..119231692, complement)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 22 (organic cation transporter), member 14 Neighboring gene STARR-seq mESC enhancer starr_25468 Neighboring gene solute carrier family 22 (organic cation transporter), member 13 Neighboring gene STARR-seq mESC enhancer starr_25469 Neighboring gene oxidative-stress responsive 1 Neighboring gene STARR-positive B cell enhancer ABC_E1119 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:119231914-119232305 Neighboring gene myeloid differentiation primary response gene 88

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Identification of six putative human transporters with structural similarity to the drug transporter SLC22 family. Jacobsson JA, et al. Genomics, 2007 Nov. PMID 17714910
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    solute carrier family 22 (organic cation transporter), member 13b
    Names
    solute carrier family 22 (orgamoc cation transporter), member 13b
    solute carrier family 22 (organic cation transporter), member 13 gene:pseudogene
    solute carrier family 22 (organic cation transporter), member 13b, pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001429598.1 → NP_001416527.1  solute carrier family 22 (organic cation transporter), member 13b

      Status: VALIDATED

      Source sequence(s)
      OW971717

    RNA

    1. NR_190748.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC055818, AC128702

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      119049557..119060758 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_175420.2: Suppressed sequence

      Description
      NM_175420.2: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene in C57BL/6.

    2. NR_033303.1: Suppressed sequence

      Description
      NR_033303.1: This RefSeq was removed because it is now thought that this gene does encode a protein.
    Nucleotide Protein Strain
    Heading Accession and Version

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