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    Gvin-ps6 GTPase, very large interferon inducible, pseudogene 6 [ Mus musculus (house mouse) ]

    Gene ID: 209380, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Gvin-ps6provided by MGI
    Official Full Name
    GTPase, very large interferon inducible, pseudogene 6provided by MGI
    Primary source
    MGI:MGI:3647753
    See related
    AllianceGenome:MGI:3647753
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm4759; EG209380
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See Gvin-ps6 in Genome Data Viewer
    Location:
    7 E3; 7 55.98 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (106020757..106040280, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (106421550..106441073, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene GTPase, very large interferon inducible 1 Neighboring gene GTPase, very large interferon inducible, pseudogene 4 Neighboring gene STARR-positive B cell enhancer mm9_chr7:113356789-113357089 Neighboring gene STARR-positive B cell enhancer mm9_chr7:113357373-113357674 Neighboring gene STARR-positive B cell enhancer mm9_chr7:113358882-113359183 Neighboring gene STARR-positive B cell enhancer mm9_chr7:113359681-113359981 Neighboring gene STARR-positive B cell enhancer ABC_E4964 Neighboring gene STARR-positive B cell enhancer ABC_E2247 Neighboring gene STARR-seq mESC enhancer starr_19749 Neighboring gene STARR-positive B cell enhancer ABC_E8196 Neighboring gene STARR-positive B cell enhancer ABC_E10460 Neighboring gene STARR-positive B cell enhancer ABC_E10461 Neighboring gene STARR-positive B cell enhancer mm9_chr7:113440593-113440894 Neighboring gene STARR-seq mESC enhancer starr_19750 Neighboring gene GTPase, very large interferon inducible, pseudogene 5 Neighboring gene STARR-positive B cell enhancer ABC_E2248 Neighboring gene predicted gene, 22372 Neighboring gene STARR-positive B cell enhancer ABC_E6582 Neighboring gene STARR-positive B cell enhancer ABC_E6583 Neighboring gene predicted gene 8995 Neighboring gene STARR-positive B cell enhancer mm9_chr7:113694817-113695117 Neighboring gene STARR-seq mESC enhancer starr_19751 Neighboring gene predicted gene, 39065

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Other Names

    • GTPase, very large interferon inducible 1 pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_003967.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC135640, AK041093

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      106020757..106040280 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001001318.2: Suppressed sequence

      Description
      NM_001001318.2: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
    Nucleotide Protein Strain
    Heading Accession and Version

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