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    C4h2orf81 similar to human chromosome 2 open reading frame 81 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 500227, updated on 27-Dec-2024

    Summary

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    Official Symbol
    C4h2orf81provided by RGD
    Official Full Name
    similar to human chromosome 2 open reading frame 81provided by RGD
    Primary source
    RGD:1566019
    See related
    AllianceGenome:RGD:1566019
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be located in cell cortex and microtubule. Predicted to be part of dynein complex. Orthologous to human C2orf81 (chromosome 2 open reading frame 81). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 83.7), Lung (RPKM 9.0) and 2 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See C4h2orf81 in Genome Data Viewer
    Location:
    4q34
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (117219357..117225633)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (115661617..115667929)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (114854449..114860678)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108350719 Neighboring gene INO80 complex subunit B Neighboring gene rhotekin Neighboring gene WD repeat domain 54 Neighboring gene dynactin subunit 1 Neighboring gene solute carrier family 4 member 5 Neighboring gene uncharacterized LOC134486596

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in cell cortex IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of dynein complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in microtubule IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C2orf81 homolog
    Names
    hypothetical gene supported by BC079424

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001024330.1 → NP_001019501.1  uncharacterized protein C2orf81 homolog

      See identical proteins and their annotated locations for NP_001019501.1

      Status: VALIDATED

      Source sequence(s)
      BC079424
      UniProtKB/Swiss-Prot
      Q6AXP4
      UniProtKB/TrEMBL
      A0A8I6AQ46
      Conserved Domains (1) summary
      pfam15479
      Location:6 → 570
      DUF4639; Domain of unknown function (DUF4639)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      117219357..117225633
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006236784.4 → XP_006236846.1  uncharacterized protein C2orf81 homolog isoform X3

      UniProtKB/TrEMBL
      A0A8I6AQ46
      Conserved Domains (1) summary
      pfam15479
      Location:6 → 496
      DUF4639; Domain of unknown function (DUF4639)

    2. XM_039108155.2 → XP_038964083.1  uncharacterized protein C2orf81 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8I6AQ46
      Conserved Domains (1) summary
      pfam15479
      Location:8 → 571
      DUF4639; Domain of unknown function (DUF4639)

    3. XM_039108156.2 → XP_038964084.1  uncharacterized protein C2orf81 homolog isoform X2

      UniProtKB/TrEMBL
      A0A8I6AQ46
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6AXP4.1 GenPept UniProtKB/Swiss-Prot:Q6AXP4

    Gene LinkOut

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