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    Glt1d1 glycosyltransferase 1 domain containing 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 304445, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Glt1d1provided by RGD
    Official Full Name
    glycosyltransferase 1 domain containing 1provided by RGD
    Primary source
    RGD:1304896
    See related
    EnsemblRapid:ENSRNOG00000000961 AllianceGenome:RGD:1304896
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1304896
    Summary
    Predicted to enable glycosyltransferase activity. Predicted to be located in cytosol. Orthologous to human GLT1D1 (glycosyltransferase 1 domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 145.9), Brain (RPKM 64.0) and 2 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Glt1d1 in Genome Data Viewer
    Location:
    12q14
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (34611942..34685591, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (28975984..29049707, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (32666664..32749617, complement)

    Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120095943 Neighboring gene transmembrane protein 132D Neighboring gene uncharacterized LOC134481288 Neighboring gene uncharacterized LOC134481183 Neighboring gene solute carrier family 15 member 4 Neighboring gene uncharacterized LOC108352443 Neighboring gene transmembrane protein 132C Neighboring gene transmembrane protein 254, pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables glycosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    glycosyltransferase 1 domain-containing protein 1
    XP_038946031.1
    XP_222147.4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001431732.1 → NP_001418661.1  glycosyltransferase 1 domain-containing protein 1 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000012
      UniProtKB/TrEMBL
      A0A8I6GMK0, D3ZUX2

    2. NM_001431733.1 → NP_001418662.1  glycosyltransferase 1 domain-containing protein 1 isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000012

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086030.1 Reference GRCr8

      Range
      34611942..34685591 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_222147.11 → XP_222147.4  glycosyltransferase 1 domain-containing protein 1 isoform X1

      Related
      ENSRNOP00000063482.1, ENSRNOT00000064526.6
      Conserved Domains (2) summary
      COG0438
      Location:58 → 340
      RfaB; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
      cl10013
      Location:67 → 328
      Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...

    2. XM_039090103.2 → XP_038946031.1  glycosyltransferase 1 domain-containing protein 1 isoform X2

      Conserved Domains (1) summary
      cd03801
      Location:12 → 238
      GT4_PimA-like; phosphatidyl-myo-inositol mannosyltransferase
    Nucleotide Protein Strain
    Heading Accession and Version

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