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    Ftdc1 ferritin domain containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 328695, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Ftdc1provided by MGI
    Official Full Name
    ferritin domain containing 1provided by MGI
    Primary source
    MGI:MGI:2685659
    See related
    Ensembl:ENSMUSG00000075002 AllianceGenome:MGI:2685659
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm813; Gm1781
    Summary
    Predicted to enable ferric iron binding activity and ferrous iron binding activity. Predicted to be active in cytoplasm. Is expressed in ovary; primary oocyte; and testis. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See Ftdc1 in Genome Data Viewer
    Location:
    16 C1.2; 16 34.72 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (58434049..58437341, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (58613686..58616978, complement)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene discoidin, CUB and LCCL domain containing 2 Neighboring gene STARR-positive B cell enhancer ABC_E3167 Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 6 Neighboring gene STARR-positive B cell enhancer ABC_E8639 Neighboring gene STARR-positive B cell enhancer ABC_E3168 Neighboring gene STARR-seq mESC enhancer starr_41097 Neighboring gene predicted gene, 20942 Neighboring gene STARR-seq mESC enhancer starr_41098 Neighboring gene STARR-positive B cell enhancer ABC_E11619 Neighboring gene STARR-seq mESC enhancer starr_41100 Neighboring gene STARR-positive B cell enhancer ABC_E7470 Neighboring gene ferritin domain containing 2 Neighboring gene predicted gene, 41464

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Identification of a novel embryo-prevalent gene, Gm11545, involved in preimplantation embryogenesis in mice. Kim J, et al. FASEB J, 2019 Oct. PMID 31322925
    2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables ferric iron binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables ferrous iron binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC328695

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033404.2 → NP_001028576.1  uncharacterized protein LOC328695

      See identical proteins and their annotated locations for NP_001028576.1

      Status: PREDICTED

      Source sequence(s)
      AK136264
      Consensus CDS
      CCDS28231.1
      UniProtKB/TrEMBL
      Q3UWK9
      Related
      ENSMUSP00000097255.2, ENSMUST00000099663.3
      Conserved Domains (2) summary
      pfam00210
      Location:14 → 151
      Ferritin; Ferritin-like domain
      cl00264
      Location:11 → 154
      Ferritin_like; Ferritin-like superfamily of diiron-containing four-helix-bundle proteins

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      58434049..58437341 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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