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    Fam228a family with sequence similarity 228, member A [ Rattus norvegicus (Norway rat) ]

    Gene ID: 313936, updated on 9-Dec-2024

    Summary

    Official Symbol
    Fam228aprovided by RGD
    Official Full Name
    family with sequence similarity 228, member Aprovided by RGD
    Primary source
    RGD:1359275
    See related
    EnsemblRapid:ENSRNOG00000050114 AllianceGenome:RGD:1359275
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human FAM228A (family with sequence similarity 228 member A). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward (RPKM 218.3) See more
    Orthologs
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    Genomic context

    See Fam228a in Genome Data Viewer
    Location:
    6q14
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (33447427..33469553, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (27727982..27750140, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (30074331..30097876)

    Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134479114 Neighboring gene intersectin 2 Neighboring gene ribosomal protein L29, pseudogene 6 Neighboring gene uncharacterized LOC134479113 Neighboring gene family with sequence similarity 228, member B Neighboring gene profilin family, member 4

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    protein FAM228A
    Names
    UPF0638 protein C2orf84 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001014074.2NP_001014096.2  protein FAM228A

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000006
      UniProtKB/Swiss-Prot
      Q5XIN5
      UniProtKB/TrEMBL
      A6HAI8
      Related
      ENSRNOP00000091169.2, ENSRNOT00000094984.2

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086024.1 Reference GRCr8

      Range
      33447427..33469553 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006239858.5XP_006239920.1  protein FAM228A isoform X1

      See identical proteins and their annotated locations for XP_006239920.1

      UniProtKB/Swiss-Prot
      Q5XIN5
      UniProtKB/TrEMBL
      A6HAI8
    2. XM_063261880.1XP_063117950.1  protein FAM228A isoform X2

      Related
      ENSRNOP00000065885.2, ENSRNOT00000070908.4