U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Armh1 armadillo-like helical domain containing 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 500531, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Armh1provided by RGD
    Official Full Name
    armadillo-like helical domain containing 1provided by RGD
    Primary source
    RGD:1563714
    See related
    EnsemblRapid:ENSRNOG00000031494 AllianceGenome:RGD:1563714
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1563714
    Summary
    Orthologous to human ARMH1 (armadillo like helical domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 50.0), Lung (RPKM 11.7) and 1 other tissue See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Armh1 in Genome Data Viewer
    Location:
    5q36
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (135919057..135958653, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (130680955..130722062, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (136073056..136112344, complement)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene U5 spliceosomal RNA Neighboring gene U5 spliceosomal RNA Neighboring gene transmembrane protein 53 Neighboring gene ring finger protein 220 Neighboring gene uncharacterized LOC134486974 Neighboring gene ribosomal protein S13, pseudogene 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    armadillo-like helical domain containing protein 1
    Names
    uncharacterized protein C1orf228 homolog

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001126297.2 → NP_001119769.2  armadillo-like helical domain containing protein 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005
      UniProtKB/TrEMBL
      D4A9P2
      Related
      ENSRNOP00000040555.3, ENSRNOT00000050195.6

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      135919057..135958653 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008764051.4 → XP_008762273.1  armadillo-like helical domain containing protein 1 isoform X1

      Conserved Domains (1) summary
      pfam17741
      Location:1 → 268
      DUF5578; Family of unknown function (DUF5578)

    2. XM_063288243.1 → XP_063144313.1  armadillo-like helical domain containing protein 1 isoform X1

    3. XM_039110597.2 → XP_038966525.1  armadillo-like helical domain containing protein 1 isoform X1

      Conserved Domains (1) summary
      pfam17741
      Location:1 → 268
      DUF5578; Family of unknown function (DUF5578)

    4. XM_039110596.2 → XP_038966524.1  armadillo-like helical domain containing protein 1 isoform X1

      Conserved Domains (1) summary
      pfam17741
      Location:1 → 268
      DUF5578; Family of unknown function (DUF5578)

    5. XM_063288244.1 → XP_063144314.1  armadillo-like helical domain containing protein 1 isoform X1

      Related
      ENSRNOP00000074149.2, ENSRNOT00000089166.3
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools