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    Ccdc183 coiled-coil domain containing 183 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 499754, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Ccdc183provided by RGD
    Official Full Name
    coiled-coil domain containing 183provided by RGD
    Primary source
    RGD:1560370
    See related
    EnsemblRapid:ENSRNOG00000017044 AllianceGenome:RGD:1560370
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human CCDC183 (coiled-coil domain containing 183). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 112.6) and Brain (RPKM 7.5) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ccdc183 in Genome Data Viewer
    Location:
    3p13
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (28826918..28837072, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (8428784..8438948, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (2832893..2843050, complement)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene apical junction component 1 homolog Neighboring gene RAB, member RAS oncogene family-like 6 Neighboring gene transmembrane protein 141 Neighboring gene ficolin A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 183

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001025040.2 → NP_001020211.2  coiled-coil domain-containing protein 183

      See identical proteins and their annotated locations for NP_001020211.2

      Status: PROVISIONAL

      Source sequence(s)
      BC160897
      UniProtKB/TrEMBL
      B1H281
      Related
      ENSRNOP00000058590.2, ENSRNOT00000061874.5
      Conserved Domains (1) summary
      COG1196
      Location:115 → 439
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      28826918..28837072 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006233635.2 → XP_006233697.1  coiled-coil domain-containing protein 183 isoform X1

      See identical proteins and their annotated locations for XP_006233697.1

      UniProtKB/TrEMBL
      B1H281
      Conserved Domains (1) summary
      COG1196
      Location:115 → 439
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    2. XM_039105661.2 → XP_038961589.1  coiled-coil domain-containing protein 183 isoform X1

      UniProtKB/TrEMBL
      B1H281
      Conserved Domains (1) summary
      COG1196
      Location:115 → 439
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    3. XM_039105663.2 → XP_038961591.1  coiled-coil domain-containing protein 183 isoform X2

      Conserved Domains (1) summary
      COG1196
      Location:47 → 371
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    RNA

    1. XR_010064682.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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