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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001656.4 → NP_001647.1 E3 ubiquitin-protein ligase TRIM23 isoform alpha
See identical proteins and their annotated locations for NP_001647.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (alpha) encodes the longest isoform. It has a unique C-terminus compared to isoforms beta and gamma of this protein.
- Source sequence(s)
-
BC022510, BI859501, L04510
- Consensus CDS
-
CCDS3987.1
- UniProtKB/Swiss-Prot
- P36406, Q9BZY4, Q9BZY5
- UniProtKB/TrEMBL
-
A8K9U9
- Related
- ENSP00000231524.9, ENST00000231524.14
- Conserved Domains (5) summary
-
- smart00502
Location:226 → 370
- BBC; B-Box C-terminal domain
- cd04158
Location:406 → 574
- ARD1; (ADP-ribosylation factor domain protein 1 (ARD1)
- cd16645
Location:28 → 77
- mRING-HC-C3HC3D_TRIM23_C-IX; Modified RING finger, HC subclass (C3HC3D-type), found in tripartite motif-containing protein 23 (TRIM23) and similar proteins
- cd19773
Location:123 → 172
- Bbox2_TRIM23_C-IX_rpt1; first B-box-type 2 zinc finger found in tripartite motif-containing protein 23 (TRIM23) and similar proteins
- cd19774
Location:174 → 223
- Bbox2_TRIM23_C-IX_rpt2; second B-box-type 2 zinc finger found in tripartite motif-containing protein 23 (TRIM23) and similar proteins
-
NM_033227.3 → NP_150230.1 E3 ubiquitin-protein ligase TRIM23 isoform beta
See identical proteins and their annotated locations for NP_150230.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (beta) is alternatively spliced near the 3' end of the coding region. This introduces a frameshift and the encoded isoform beta has a unique C-terminus compared to isoforms alpha and gamma.
- Source sequence(s)
-
AF230398, BC022510, BI859501
- Consensus CDS
-
CCDS43322.1
- UniProtKB/TrEMBL
-
A8K9U9
- Related
- ENSP00000370406.3, ENST00000381018.7
- Conserved Domains (5) summary
-
- smart00502
Location:226 → 370
- BBC; B-Box C-terminal domain
- cd16645
Location:28 → 77
- mRING-HC-C3HC3D_TRIM23_C-IX; Modified RING finger, HC subclass (C3HC3D-type), found in tripartite motif-containing protein 23 (TRIM23) and similar proteins
- cd19773
Location:123 → 172
- Bbox2_TRIM23_C-IX_rpt1; first B-box-type 2 zinc finger found in tripartite motif-containing protein 23 (TRIM23) and similar proteins
- cd19774
Location:174 → 223
- Bbox2_TRIM23_C-IX_rpt2; second B-box-type 2 zinc finger found in tripartite motif-containing protein 23 (TRIM23) and similar proteins
- cl38936
Location:406 → 550
- P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
-
NM_033228.3 → NP_150231.1 E3 ubiquitin-protein ligase TRIM23 isoform gamma
See identical proteins and their annotated locations for NP_150231.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (gamma) is alternatively spliced near the 3' end of the coding region. This introduces a frameshift and the encoded isoform gamma has a unique C-terminus compared to isoforms alpha and beta.
- Source sequence(s)
-
AF230399, BC022510, BI859501
- Consensus CDS
-
CCDS3986.1
- UniProtKB/TrEMBL
-
A8K9U9
- Related
- ENSP00000274327.7, ENST00000274327.11
- Conserved Domains (5) summary
-
- smart00502
Location:226 → 370
- BBC; B-Box C-terminal domain
- smart00336
Location:173 → 219
- BBOX; B-Box-type zinc finger
- cd00021
Location:125 → 168
- BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
- cd16645
Location:28 → 77
- mRING-HC-C3HC3D_TRIM23_C-IX; Modified RING finger, HC subclass (C3HC3D-type), found in tripartite motif-containing protein 23 (TRIM23) and similar proteins
- cl21455
Location:406 → 540
- P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000005.10 Reference GRCh38.p14 Primary Assembly
- Range
-
65589690..65624333 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017009444.3 → XP_016864933.1 E3 ubiquitin-protein ligase TRIM23 isoform X2
- UniProtKB/TrEMBL
-
A8K9U9
- Conserved Domains (5) summary
-
- smart00502
Location:226 → 370
- BBC; B-Box C-terminal domain
- cd16645
Location:28 → 77
- mRING-HC-C3HC3D_TRIM23_C-IX; Modified RING finger, HC subclass (C3HC3D-type), found in tripartite motif-containing protein 23 (TRIM23) and similar proteins
- cd19773
Location:123 → 172
- Bbox2_TRIM23_C-IX_rpt1; first B-box-type 2 zinc finger found in tripartite motif-containing protein 23 (TRIM23) and similar proteins
- cd19774
Location:174 → 223
- Bbox2_TRIM23_C-IX_rpt2; second B-box-type 2 zinc finger found in tripartite motif-containing protein 23 (TRIM23) and similar proteins
- cl38936
Location:406 → 550
- P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
-
XM_047417155.1 → XP_047273111.1 E3 ubiquitin-protein ligase TRIM23 isoform X1
Alternate T2T-CHM13v2.0
Genomic
-
NC_060929.1 Alternate T2T-CHM13v2.0
- Range
-
66411457..66448919 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054352528.1 → XP_054208503.1 E3 ubiquitin-protein ligase TRIM23 isoform X3
- UniProtKB/Swiss-Prot
- P36406, Q9BZY4, Q9BZY5
- UniProtKB/TrEMBL
-
A8K9U9
-
XM_054352530.1 → XP_054208505.1 E3 ubiquitin-protein ligase TRIM23 isoform X3
- UniProtKB/Swiss-Prot
- P36406, Q9BZY4, Q9BZY5
- UniProtKB/TrEMBL
-
A8K9U9
-
XM_054352529.1 → XP_054208504.1 E3 ubiquitin-protein ligase TRIM23 isoform X3
- UniProtKB/Swiss-Prot
- P36406, Q9BZY4, Q9BZY5
- UniProtKB/TrEMBL
-
A8K9U9
-
XM_054352532.1 → XP_054208507.1 E3 ubiquitin-protein ligase TRIM23 isoform X2
- UniProtKB/TrEMBL
-
A8K9U9
-
XM_054352531.1 → XP_054208506.1 E3 ubiquitin-protein ligase TRIM23 isoform X1