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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001190942.2 → NP_001177871.1 tumor necrosis factor ligand superfamily member 10 isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks two consecutive exons in the CDS, resulting in a frame-shift, as compared to variant 1. The resulting isoform (2) is shorter and has a different C-terminus, as compared to isoform 1.
- Source sequence(s)
-
AC016938, AK296085
- Consensus CDS
-
CCDS54680.1
- UniProtKB/Swiss-Prot
-
P50591
- Related
- ENSP00000389931.2, ENST00000420541.6
-
NM_001190943.2 → NP_001177872.1 tumor necrosis factor ligand superfamily member 10 isoform 3
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) lacks multiple 3' exons, but has an alternate 3' exon, as compared to variant 1. The resulting isoform (3) is very short and has a different C-terminus, as compared to isoform 1.
- Source sequence(s)
-
AC007919, AC016938
- Related
-
ENST00000466777.1
-
NM_003810.4 → NP_003801.1 tumor necrosis factor ligand superfamily member 10 isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
AC007919, AC016938
- Consensus CDS
-
CCDS3219.1
- UniProtKB/Swiss-Prot
- A1Y9B3, P50591
- UniProtKB/TrEMBL
- A0A0U5EM55, Q6IBA9
- Related
- ENSP00000241261.2, ENST00000241261.7
- Conserved Domains (1) summary
-
- pfam00229
Location:153 → 280
- TNF; TNF(tumor Necrosis Factor) family
RNA
-
NR_033994.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) lacks an internal exon in the CDS, resulting in frame-shift and a premature translation termination, as compared to variant 1. The transcript is a nonsense-mediated mRNA decay candidate.
- Source sequence(s)
-
AC016938, DA041872
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000003.12 Reference GRCh38.p14 Primary Assembly
- Range
-
172505508..172523430 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060927.1 Alternate T2T-CHM13v2.0
- Range
-
175290584..175308501 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)