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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001301627.2 → NP_001288556.1 polypeptide N-acetylgalactosaminyltransferase 13 isoform 2
See identical proteins and their annotated locations for NP_001288556.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 3' UTR and contains an alternate exon in the 3' coding region resulting in a frameshift compared to variant 1. The encoded isoform (2) is longer, and has a distinct C-terminus, compared to isoform 1.
- Source sequence(s)
-
AC008166, AC009227, AC009297, AC092584, AC133107
- Consensus CDS
-
CCDS77472.1
- UniProtKB/TrEMBL
-
B3KY85
- Related
- ENSP00000387239.1, ENST00000409237.5
- Conserved Domains (2) summary
-
- cd02510
Location:118 → 418
- pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
- pfam00652
Location:431 → 538
- Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
-
NM_001376392.1 → NP_001363321.1 polypeptide N-acetylgalactosaminyltransferase 13 isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3), as well as variants 1 and 4-8, encodes isoform 1.
- Source sequence(s)
-
AC008166, AC009227, AC009297, AC092584, AC133107
- Consensus CDS
-
CCDS2199.1
- UniProtKB/Swiss-Prot
- Q08ER7, Q68VI8, Q6ZWG1, Q8IUC8, Q96PX0, Q9UIE5
- UniProtKB/TrEMBL
-
B3KY85
- Conserved Domains (2) summary
-
- cd02510
Location:118 → 418
- pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
- pfam00652
Location:431 → 547
- Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
-
NM_001376394.1 → NP_001363323.1 polypeptide N-acetylgalactosaminyltransferase 13 isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (4), as well as variants 1, 3, and 5-8, encodes isoform 1.
- Source sequence(s)
-
AC008166, AC009227, AC009297, AC092584, AC133107
- Consensus CDS
-
CCDS2199.1
- UniProtKB/Swiss-Prot
- Q08ER7, Q68VI8, Q6ZWG1, Q8IUC8, Q96PX0, Q9UIE5
- UniProtKB/TrEMBL
-
B3KY85
- Conserved Domains (2) summary
-
- cd02510
Location:118 → 418
- pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
- pfam00652
Location:431 → 547
- Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
-
NM_001376398.1 → NP_001363327.1 polypeptide N-acetylgalactosaminyltransferase 13 isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (5), as well as variants 1, 3, 4, and 6-8, encodes isoform 1.
- Source sequence(s)
-
AC008166, AC009227, AC009297, AC092584, AC133107
- Consensus CDS
-
CCDS2199.1
- UniProtKB/Swiss-Prot
- Q08ER7, Q68VI8, Q6ZWG1, Q8IUC8, Q96PX0, Q9UIE5
- UniProtKB/TrEMBL
-
B3KY85
- Conserved Domains (2) summary
-
- cd02510
Location:118 → 418
- pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
- pfam00652
Location:431 → 547
- Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
-
NM_001376400.1 → NP_001363329.1 polypeptide N-acetylgalactosaminyltransferase 13 isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (7), as well as variants 1, 3-6, and 8, encodes isoform 1.
- Source sequence(s)
-
AC008166, AC009227, AC009297, AC092584, AC133107
- Consensus CDS
-
CCDS2199.1
- UniProtKB/Swiss-Prot
- Q08ER7, Q68VI8, Q6ZWG1, Q8IUC8, Q96PX0, Q9UIE5
- UniProtKB/TrEMBL
-
B3KY85
- Conserved Domains (2) summary
-
- cd02510
Location:118 → 418
- pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
- pfam00652
Location:431 → 547
- Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
-
NM_001376401.1 → NP_001363330.1 polypeptide N-acetylgalactosaminyltransferase 13 isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (6), as well as variants 1, 3-5, 7, and 8, encodes isoform 1.
- Source sequence(s)
-
AC008166, AC009227, AC009297, AC092584, AC133107
- Consensus CDS
-
CCDS2199.1
- UniProtKB/Swiss-Prot
- Q08ER7, Q68VI8, Q6ZWG1, Q8IUC8, Q96PX0, Q9UIE5
- UniProtKB/TrEMBL
-
B3KY85
- Conserved Domains (2) summary
-
- cd02510
Location:118 → 418
- pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
- pfam00652
Location:431 → 547
- Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
-
NM_001376402.1 → NP_001363331.1 polypeptide N-acetylgalactosaminyltransferase 13 isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (8), as well as variants 1 and 3-7, encodes isoform 1.
- Source sequence(s)
-
AC008166, AC009227, AC009297, AC092584, AC133107
- Consensus CDS
-
CCDS2199.1
- UniProtKB/Swiss-Prot
- Q08ER7, Q68VI8, Q6ZWG1, Q8IUC8, Q96PX0, Q9UIE5
- UniProtKB/TrEMBL
-
B3KY85
- Conserved Domains (2) summary
-
- cd02510
Location:118 → 418
- pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
- pfam00652
Location:431 → 547
- Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
-
NM_001376403.1 → NP_001363332.1 polypeptide N-acetylgalactosaminyltransferase 13 isoform 3
Status: VALIDATED
- Description
- Transcript Variant: This variant (9), as well as variant 10, encodes the longest isoform (3).
- Source sequence(s)
-
AC008166, AC009227, AC009297, AC092584, AC133107
- UniProtKB/TrEMBL
-
B3KY85
- Conserved Domains (2) summary
-
- cd02510
Location:118 → 418
- pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
- pfam00652
Location:431 → 548
- Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
-
NM_001376404.1 → NP_001363333.1 polypeptide N-acetylgalactosaminyltransferase 13 isoform 3
Status: VALIDATED
- Description
- Transcript Variant: This variant (10), as well as variant 9, encodes the longest isoform (3).
- Source sequence(s)
-
AC008166, AC009227, AC009297, AC092584, AC133107
- UniProtKB/TrEMBL
-
B3KY85
- Conserved Domains (2) summary
-
- cd02510
Location:118 → 418
- pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
- pfam00652
Location:431 → 548
- Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
-
NM_001376405.1 → NP_001363334.1 polypeptide N-acetylgalactosaminyltransferase 13 isoform 4
Status: VALIDATED
- Source sequence(s)
-
AC008166, AC009227, AC009297, AC092584, AC133107
- UniProtKB/TrEMBL
- A0A1L4BJA8, A0A1L4BJA9
- Conserved Domains (2) summary
-
- pfam00652
Location:346 → 461
- Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
- cl11394
Location:118 → 286
- Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
-
NM_001422879.1 → NP_001409808.1 polypeptide N-acetylgalactosaminyltransferase 13 isoform 3
Status: VALIDATED
- Source sequence(s)
-
AC008166, AC009227, AC009297, AC012501, AC092584, AC133107
- UniProtKB/TrEMBL
-
B3KY85
-
NM_001422880.1 → NP_001409809.1 polypeptide N-acetylgalactosaminyltransferase 13 isoform 1
Status: VALIDATED
- Source sequence(s)
-
AC008166, AC009227, AC009297, AC012501, AC092584, AC133107
- UniProtKB/Swiss-Prot
- Q08ER7, Q68VI8, Q6ZWG1, Q8IUC8, Q96PX0, Q9UIE5
- UniProtKB/TrEMBL
-
B3KY85
-
NM_001422881.1 → NP_001409810.1 polypeptide N-acetylgalactosaminyltransferase 13 isoform 1
Status: VALIDATED
- Source sequence(s)
-
AC008166, AC009227, AC009297, AC012501, AC092584, AC133107
- UniProtKB/Swiss-Prot
- Q08ER7, Q68VI8, Q6ZWG1, Q8IUC8, Q96PX0, Q9UIE5
- UniProtKB/TrEMBL
-
B3KY85
-
NM_001422882.1 → NP_001409811.1 polypeptide N-acetylgalactosaminyltransferase 13 isoform 1
Status: VALIDATED
- Source sequence(s)
-
AC008166, AC009227, AC009297, AC011901, AC079150, AC092584, AC133107
- UniProtKB/Swiss-Prot
- Q08ER7, Q68VI8, Q6ZWG1, Q8IUC8, Q96PX0, Q9UIE5
- UniProtKB/TrEMBL
-
B3KY85
-
NM_001422883.1 → NP_001409812.1 polypeptide N-acetylgalactosaminyltransferase 13 isoform 5
Status: VALIDATED
- Source sequence(s)
-
AC009227, AC009297, AC011901, AC079150, AC092584, AC133107
-
NM_052917.4 → NP_443149.2 polypeptide N-acetylgalactosaminyltransferase 13 isoform 1
See identical proteins and their annotated locations for NP_443149.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (1), as well as variants 3-8, encodes isoform 1.
- Source sequence(s)
-
AC008166, AC009227, AC009297, AC092584, AC133107
- Consensus CDS
-
CCDS2199.1
- UniProtKB/Swiss-Prot
- Q08ER7, Q68VI8, Q6ZWG1, Q8IUC8, Q96PX0, Q9UIE5
- UniProtKB/TrEMBL
-
B3KY85
- Related
- ENSP00000376570.3, ENST00000392825.8
- Conserved Domains (2) summary
-
- cd02510
Location:118 → 418
- pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
- pfam00652
Location:431 → 547
- Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000002.12 Reference GRCh38.p14 Primary Assembly
- Range
-
153068293..154456574
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047443116.1 → XP_047299072.1 polypeptide N-acetylgalactosaminyltransferase 13 isoform X1
- UniProtKB/TrEMBL
-
B3KY85
-
XM_011510538.3 → XP_011508840.1 polypeptide N-acetylgalactosaminyltransferase 13 isoform X3
- Conserved Domains (3) summary
-
- cd02510
Location:1 → 237
- pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
- cd00161
Location:250 → 369
- RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
- pfam00652
Location:250 → 367
- Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
-
XM_047443121.1 → XP_047299077.1 polypeptide N-acetylgalactosaminyltransferase 13 isoform X3
RNA
-
XR_007069045.1 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060926.1 Alternate T2T-CHM13v2.0
- Range
-
153520817..154909642
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054340353.1 → XP_054196328.1 polypeptide N-acetylgalactosaminyltransferase 13 isoform X1
- UniProtKB/TrEMBL
-
B3KY85
-
XM_054340355.1 → XP_054196330.1 polypeptide N-acetylgalactosaminyltransferase 13 isoform X3
-
XM_054340356.1 → XP_054196331.1 polypeptide N-acetylgalactosaminyltransferase 13 isoform X3
RNA
-
XR_008486258.1 RNA Sequence