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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001256550.2 → NP_001243479.1 protein PALS1 isoform 2
See identical proteins and their annotated locations for NP_001243479.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) uses an alternate in-frame splice site, lacks a portion of the 5' coding region and initiates translation at a downstream start codon compared to variant 1. The resulting protein (isoform 2) has a shorter N-terminus compared to isoform 1.
- Source sequence(s)
-
AL139785, AL832578, DA095710, DR003886
- Consensus CDS
-
CCDS58325.1
- UniProtKB/TrEMBL
- A8K5C5, Q4VBP4
- Related
- ENSP00000451488.1, ENST00000555925.5
- Conserved Domains (5) summary
-
- smart00569
Location:155 → 203
- L27; domain in receptor targeting proteins Lin-2 and Lin-7
- cd12036
Location:315 → 377
- SH3_MPP5; Src Homology 3 domain of Membrane Protein, Palmitoylated 5 (or MAGUK p55 subfamily member 5)
- smart00072
Location:457 → 627
- GuKc; Guanylate kinase homologues
- cd00992
Location:220 → 299
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- pfam09060
Location:89 → 136
- L27_N
-
NM_022474.4 → NP_071919.2 protein PALS1 isoform 1
See identical proteins and their annotated locations for NP_071919.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longer transcript and encodes the longer protein (isoform 1).
- Source sequence(s)
-
AI245706, AL139785, AL832578, AL832936, BC053366
- Consensus CDS
-
CCDS9779.1
- UniProtKB/Swiss-Prot
- A1L380, Q7Z631, Q86T98, Q8N3R9, Q8N7I5, Q9H9Q0
- UniProtKB/TrEMBL
-
Q4VBP4
- Related
- ENSP00000261681.4, ENST00000261681.9
- Conserved Domains (5) summary
-
- smart00569
Location:189 → 237
- L27; domain in receptor targeting proteins Lin-2 and Lin-7
- cd12036
Location:349 → 411
- SH3_MPP5; Src Homology 3 domain of Membrane Protein, Palmitoylated 5 (or MAGUK p55 subfamily member 5)
- smart00072
Location:491 → 661
- GuKc; Guanylate kinase homologues
- cd00992
Location:254 → 333
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- pfam09060
Location:123 → 170
- L27_N
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000014.9 Reference GRCh38.p14 Primary Assembly
- Range
-
67241435..67336061
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047431691.1 → XP_047287647.1 protein PALS1 isoform X1
- UniProtKB/Swiss-Prot
- A1L380, Q7Z631, Q86T98, Q8N3R9, Q8N7I5, Q9H9Q0
- UniProtKB/TrEMBL
-
Q4VBP4
- Related
- ENSP00000503321.1, ENST00000678380.1
-
XM_047431692.1 → XP_047287648.1 protein PALS1 isoform X1
- UniProtKB/Swiss-Prot
- A1L380, Q7Z631, Q86T98, Q8N3R9, Q8N7I5, Q9H9Q0
- UniProtKB/TrEMBL
-
Q4VBP4
-
XM_011537086.3 → XP_011535388.1 protein PALS1 isoform X1
See identical proteins and their annotated locations for XP_011535388.1
- UniProtKB/Swiss-Prot
- A1L380, Q7Z631, Q86T98, Q8N3R9, Q8N7I5, Q9H9Q0
- UniProtKB/TrEMBL
-
Q4VBP4
- Related
- ENSP00000503713.1, ENST00000676464.1
- Conserved Domains (5) summary
-
- smart00569
Location:189 → 237
- L27; domain in receptor targeting proteins Lin-2 and Lin-7
- cd12036
Location:349 → 411
- SH3_MPP5; Src Homology 3 domain of Membrane Protein, Palmitoylated 5 (or MAGUK p55 subfamily member 5)
- smart00072
Location:491 → 661
- GuKc; Guanylate kinase homologues
- cd00992
Location:254 → 333
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- pfam09060
Location:123 → 170
- L27_N
-
XM_024449691.2 → XP_024305459.1 protein PALS1 isoform X2
- UniProtKB/TrEMBL
- A8K5C5, Q4VBP4
- Conserved Domains (5) summary
-
- smart00569
Location:155 → 203
- L27; domain in receptor targeting proteins Lin-2 and Lin-7
- cd12036
Location:315 → 377
- SH3_MPP5; Src Homology 3 domain of Membrane Protein, Palmitoylated 5 (or MAGUK p55 subfamily member 5)
- smart00072
Location:457 → 627
- GuKc; Guanylate kinase homologues
- cd00992
Location:220 → 299
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- pfam09060
Location:89 → 136
- L27_N
-
XM_047431696.1 → XP_047287652.1 protein PALS1 isoform X3
- UniProtKB/TrEMBL
-
Q658X5
-
XM_024449692.2 → XP_024305460.1 protein PALS1 isoform X2
- UniProtKB/TrEMBL
- A8K5C5, Q4VBP4
- Conserved Domains (5) summary
-
- smart00569
Location:155 → 203
- L27; domain in receptor targeting proteins Lin-2 and Lin-7
- cd12036
Location:315 → 377
- SH3_MPP5; Src Homology 3 domain of Membrane Protein, Palmitoylated 5 (or MAGUK p55 subfamily member 5)
- smart00072
Location:457 → 627
- GuKc; Guanylate kinase homologues
- cd00992
Location:220 → 299
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- pfam09060
Location:89 → 136
- L27_N
-
XM_047431693.1 → XP_047287649.1 protein PALS1 isoform X1
- UniProtKB/Swiss-Prot
- A1L380, Q7Z631, Q86T98, Q8N3R9, Q8N7I5, Q9H9Q0
- UniProtKB/TrEMBL
-
Q4VBP4
-
XM_047431690.1 → XP_047287646.1 protein PALS1 isoform X1
- UniProtKB/Swiss-Prot
- A1L380, Q7Z631, Q86T98, Q8N3R9, Q8N7I5, Q9H9Q0
- UniProtKB/TrEMBL
-
Q4VBP4
-
XM_047431695.1 → XP_047287651.1 protein PALS1 isoform X2
- UniProtKB/TrEMBL
- A8K5C5, Q4VBP4
-
XM_011537087.3 → XP_011535389.1 protein PALS1 isoform X1
See identical proteins and their annotated locations for XP_011535389.1
- UniProtKB/Swiss-Prot
- A1L380, Q7Z631, Q86T98, Q8N3R9, Q8N7I5, Q9H9Q0
- UniProtKB/TrEMBL
-
Q4VBP4
- Conserved Domains (5) summary
-
- smart00569
Location:189 → 237
- L27; domain in receptor targeting proteins Lin-2 and Lin-7
- cd12036
Location:349 → 411
- SH3_MPP5; Src Homology 3 domain of Membrane Protein, Palmitoylated 5 (or MAGUK p55 subfamily member 5)
- smart00072
Location:491 → 661
- GuKc; Guanylate kinase homologues
- cd00992
Location:254 → 333
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- pfam09060
Location:123 → 170
- L27_N
-
XM_005268003.2 → XP_005268060.1 protein PALS1 isoform X2
See identical proteins and their annotated locations for XP_005268060.1
- UniProtKB/TrEMBL
- A8K5C5, Q4VBP4
- Conserved Domains (5) summary
-
- smart00569
Location:155 → 203
- L27; domain in receptor targeting proteins Lin-2 and Lin-7
- cd12036
Location:315 → 377
- SH3_MPP5; Src Homology 3 domain of Membrane Protein, Palmitoylated 5 (or MAGUK p55 subfamily member 5)
- smart00072
Location:457 → 627
- GuKc; Guanylate kinase homologues
- cd00992
Location:220 → 299
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- pfam09060
Location:89 → 136
- L27_N
Alternate T2T-CHM13v2.0
Genomic
-
NC_060938.1 Alternate T2T-CHM13v2.0
- Range
-
61448560..61543185
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054376594.1 → XP_054232569.1 protein PALS1 isoform X1
- UniProtKB/TrEMBL
-
Q4VBP4
-
XM_054376593.1 → XP_054232568.1 protein PALS1 isoform X1
- UniProtKB/TrEMBL
-
Q4VBP4
-
XM_054376599.1 → XP_054232574.1 protein PALS1 isoform X2
- UniProtKB/TrEMBL
- A8K5C5, Q4VBP4
-
XM_054376603.1 → XP_054232578.1 protein PALS1 isoform X3
- UniProtKB/TrEMBL
-
Q658X5
-
XM_054376596.1 → XP_054232571.1 protein PALS1 isoform X1
- UniProtKB/TrEMBL
-
Q4VBP4
-
XM_054376602.1 → XP_054232577.1 protein PALS1 isoform X2
- UniProtKB/TrEMBL
- A8K5C5, Q4VBP4
-
XM_054376598.1 → XP_054232573.1 protein PALS1 isoform X1
- UniProtKB/TrEMBL
-
Q4VBP4
-
XM_054376597.1 → XP_054232572.1 protein PALS1 isoform X1
- UniProtKB/TrEMBL
-
Q4VBP4
-
XM_054376600.1 → XP_054232575.1 protein PALS1 isoform X2
- UniProtKB/TrEMBL
- A8K5C5, Q4VBP4
-
XM_054376601.1 → XP_054232576.1 protein PALS1 isoform X2
- UniProtKB/TrEMBL
- A8K5C5, Q4VBP4
-
XM_054376595.1 → XP_054232570.1 protein PALS1 isoform X1
- UniProtKB/TrEMBL
-
Q4VBP4