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    Garin1b golgi associated RAB2 interactor 1B [ Rattus norvegicus (Norway rat) ]

    Gene ID: 500061, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Garin1bprovided by RGD
    Official Full Name
    golgi associated RAB2 interactor 1Bprovided by RGD
    Primary source
    RGD:1564147
    See related
    EnsemblRapid:ENSRNOG00000006132 AllianceGenome:RGD:1564147
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Fam71f1; Tdrns18l1
    Summary
    Predicted to be involved in acrosome assembly and acrosome reaction. Predicted to be located in Golgi apparatus. Orthologous to human GARIN1B (golgi associated RAB2 interactor 1B). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward (RPKM 351.2) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Garin1b in Genome Data Viewer
    Location:
    4q22
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (58880537..58903966)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (57915184..57938593)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (56591719..56615157)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134486744 Neighboring gene hypoxia inducible lipid droplet-associated Neighboring gene uncharacterized LOC103692085 Neighboring gene golgi associated RAB2 interactor 1A Neighboring gene calumenin Neighboring gene opsin 1, short wave sensitive

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in acrosome assembly ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in acrosome assembly ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in acrosome reaction ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in acrosome reaction ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in Golgi apparatus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    Golgi-associated RAB2 interactor protein 1B
    Names
    Golgi associated RAB2 interactor protein 1B
    family with sequence similarity 71, member F1
    protein FAM71F1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001024324.1 → NP_001019495.1  Golgi-associated RAB2 interactor protein 1B

      See identical proteins and their annotated locations for NP_001019495.1

      Status: PROVISIONAL

      Source sequence(s)
      BC079297
      UniProtKB/Swiss-Prot
      Q68FV5
      Conserved Domains (1) summary
      pfam12480
      Location:137 → 208
      DUF3699; Protein of unknown function (DUF3699)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      58880537..58903966
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006236223.5 → XP_006236285.1  Golgi-associated RAB2 interactor protein 1B isoform X1

      UniProtKB/TrEMBL
      F1LR05
      Conserved Domains (1) summary
      pfam12480
      Location:143 → 208
      DUF3699; Protein of unknown function (DUF3699)

    2. XM_006236225.5 → XP_006236287.1  Golgi-associated RAB2 interactor protein 1B isoform X9

      Conserved Domains (1) summary
      pfam12480
      Location:137 → 208
      DUF3699; Protein of unknown function (DUF3699)

    3. XM_006236224.5 → XP_006236286.1  Golgi-associated RAB2 interactor protein 1B isoform X2

      UniProtKB/TrEMBL
      F1LR05
      Related
      ENSRNOP00000047959.3, ENSRNOT00000041207.5
      Conserved Domains (1) summary
      pfam12480
      Location:137 → 208
      DUF3699; Protein of unknown function (DUF3699)

    4. XM_017592787.3 → XP_017448276.1  Golgi-associated RAB2 interactor protein 1B isoform X10

      UniProtKB/TrEMBL
      A6IEC4

    5. XM_008762818.4 → XP_008761040.1  Golgi-associated RAB2 interactor protein 1B isoform X3

      Conserved Domains (1) summary
      pfam12480
      Location:137 → 208
      DUF3699; Protein of unknown function (DUF3699)

    6. XM_039108114.2 → XP_038964042.1  Golgi-associated RAB2 interactor protein 1B isoform X11

      UniProtKB/TrEMBL
      A6IEC4
      Conserved Domains (1) summary
      pfam12480
      Location:143 → 208
      DUF3699; Protein of unknown function (DUF3699)

    7. XM_017592785.3 → XP_017448274.1  Golgi-associated RAB2 interactor protein 1B isoform X4

    8. XM_063286487.1 → XP_063142557.1  Golgi-associated RAB2 interactor protein 1B isoform X5

    9. XM_039108115.2 → XP_038964043.1  Golgi-associated RAB2 interactor protein 1B isoform X12

      Conserved Domains (1) summary
      pfam12480
      Location:79 → 144
      DUF3699; Protein of unknown function (DUF3699)

    10. XM_063286493.1 → XP_063142563.1  Golgi-associated RAB2 interactor protein 1B isoform X15

    11. XM_063286491.1 → XP_063142561.1  Golgi-associated RAB2 interactor protein 1B isoform X13

    12. XM_063286494.1 → XP_063142564.1  Golgi-associated RAB2 interactor protein 1B isoform X16

    13. XM_063286488.1 → XP_063142558.1  Golgi-associated RAB2 interactor protein 1B isoform X6

    14. XM_063286489.1 → XP_063142559.1  Golgi-associated RAB2 interactor protein 1B isoform X7

    15. XM_063286490.1 → XP_063142560.1  Golgi-associated RAB2 interactor protein 1B isoform X8

    16. XM_063286492.1 → XP_063142562.1  Golgi-associated RAB2 interactor protein 1B isoform X14

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q68FV5.1 GenPept UniProtKB/Swiss-Prot:Q68FV5

    Gene LinkOut

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