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    Kbtbd11 kelch repeat and BTB domain containing 11 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 306617, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Kbtbd11provided by RGD
    Official Full Name
    kelch repeat and BTB domain containing 11provided by RGD
    Primary source
    RGD:1563576
    See related
    EnsemblRapid:ENSRNOG00000012333 AllianceGenome:RGD:1563576
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1563576
    Summary
    Orthologous to human KBTBD11 (kelch repeat and BTB domain containing 11). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Kidney (RPKM 90.9), Brain (RPKM 59.6) and 7 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Kbtbd11 in Genome Data Viewer
    Location:
    16q12.5
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 16 NC_086034.1 (81318596..81340334, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (74618291..74638010, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (79696395..79716129, complement)

    Chromosome 16 - NC_086034.1Genomic Context describing neighboring genes Neighboring gene ribosomal oxygenase 2, pseudogene 2 Neighboring gene uncharacterized LOC102551089 Neighboring gene myomesin 2 Neighboring gene uncharacterized LOC102551149 Neighboring gene uncharacterized LOC134482526 Neighboring gene uncharacterized LOC102557538 Neighboring gene Rho guanine nucleotide exchange factor 10

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    kelch repeat and BTB domain-containing protein 11
    Names
    kelch repeat and BTB (POZ) domain containing 11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001107326.1 → NP_001100796.1  kelch repeat and BTB domain-containing protein 11

      See identical proteins and their annotated locations for NP_001100796.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473970
      UniProtKB/TrEMBL
      A6IWD2, D4A5J1
      Conserved Domains (6) summary
      smart00612
      Location:419 → 455
      Kelch; Kelch domain
      smart00225
      Location:147 → 237
      BTB; Broad-Complex, Tramtrack and Bric a brac
      sd00038
      Location:356 → 404
      Kelch; KELCH repeat [structural motif]
      pfam00651
      Location:147 → 233
      BTB; BTB/POZ domain
      pfam01344
      Location:354 → 405
      Kelch_1; Kelch motif
      cl06652
      Location:237 → 276
      BACK_like; BTB-And-C-terminal-Kelch (BACK) domain and similar domains

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086034.1 Reference GRCr8

      Range
      81318596..81340334 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006253392.5 → XP_006253454.1  kelch repeat and BTB domain-containing protein 11 isoform X1

      See identical proteins and their annotated locations for XP_006253454.1

      UniProtKB/TrEMBL
      A6IWD2, D4A5J1
      Related
      ENSRNOP00000105254.1, ENSRNOT00000138542.1
      Conserved Domains (6) summary
      smart00612
      Location:419 → 455
      Kelch; Kelch domain
      smart00225
      Location:147 → 237
      BTB; Broad-Complex, Tramtrack and Bric a brac
      sd00038
      Location:356 → 404
      Kelch; KELCH repeat [structural motif]
      pfam00651
      Location:147 → 233
      BTB; BTB/POZ domain
      pfam01344
      Location:354 → 405
      Kelch_1; Kelch motif
      cl06652
      Location:237 → 276
      BACK_like; BTB-And-C-terminal-Kelch (BACK) domain and similar domains

    2. XM_006253393.5 → XP_006253455.1  kelch repeat and BTB domain-containing protein 11 isoform X1

      See identical proteins and their annotated locations for XP_006253455.1

      UniProtKB/TrEMBL
      A6IWD2, D4A5J1
      Conserved Domains (6) summary
      smart00612
      Location:419 → 455
      Kelch; Kelch domain
      smart00225
      Location:147 → 237
      BTB; Broad-Complex, Tramtrack and Bric a brac
      sd00038
      Location:356 → 404
      Kelch; KELCH repeat [structural motif]
      pfam00651
      Location:147 → 233
      BTB; BTB/POZ domain
      pfam01344
      Location:354 → 405
      Kelch_1; Kelch motif
      cl06652
      Location:237 → 276
      BACK_like; BTB-And-C-terminal-Kelch (BACK) domain and similar domains

    3. XM_006253391.5 → XP_006253453.1  kelch repeat and BTB domain-containing protein 11 isoform X1

      See identical proteins and their annotated locations for XP_006253453.1

      UniProtKB/TrEMBL
      A6IWD2, D4A5J1
      Conserved Domains (6) summary
      smart00612
      Location:419 → 455
      Kelch; Kelch domain
      smart00225
      Location:147 → 237
      BTB; Broad-Complex, Tramtrack and Bric a brac
      sd00038
      Location:356 → 404
      Kelch; KELCH repeat [structural motif]
      pfam00651
      Location:147 → 233
      BTB; BTB/POZ domain
      pfam01344
      Location:354 → 405
      Kelch_1; Kelch motif
      cl06652
      Location:237 → 276
      BACK_like; BTB-And-C-terminal-Kelch (BACK) domain and similar domains

    4. XM_006253390.5 → XP_006253452.1  kelch repeat and BTB domain-containing protein 11 isoform X1

      See identical proteins and their annotated locations for XP_006253452.1

      UniProtKB/TrEMBL
      A6IWD2, D4A5J1
      Related
      ENSRNOP00000106328.1, ENSRNOT00000168987.1
      Conserved Domains (6) summary
      smart00612
      Location:419 → 455
      Kelch; Kelch domain
      smart00225
      Location:147 → 237
      BTB; Broad-Complex, Tramtrack and Bric a brac
      sd00038
      Location:356 → 404
      Kelch; KELCH repeat [structural motif]
      pfam00651
      Location:147 → 233
      BTB; BTB/POZ domain
      pfam01344
      Location:354 → 405
      Kelch_1; Kelch motif
      cl06652
      Location:237 → 276
      BACK_like; BTB-And-C-terminal-Kelch (BACK) domain and similar domains
    Nucleotide Protein Strain
    Heading Accession and Version

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