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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001164074.1 → NP_001157546.1 homeobox protein TGIF1 isoform c
See identical proteins and their annotated locations for NP_001157546.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) represents use of an alternate promoter and 5' UTR and uses a downstream start codon, compared to variant 1. The resulting isoform (c) has a shorter N-terminus, compared to isoform a. Variants 3, 4, and 5 all encode the same isoform.
- Source sequence(s)
-
AC079441, AK160193, BY096128
- Consensus CDS
-
CCDS50174.1
- UniProtKB/TrEMBL
- D3Z0Q5, Q3TVD4
- Related
- ENSMUSP00000113192.2, ENSMUST00000118283.8
- Conserved Domains (1) summary
-
- pfam05920
Location:33 → 72
- Homeobox_KN; Homeobox KN domain
-
NM_001164075.1 → NP_001157547.1 homeobox protein TGIF1 isoform a
See identical proteins and their annotated locations for NP_001157547.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a).
- Source sequence(s)
-
AC079441, CT009715
- Consensus CDS
-
CCDS50175.1
- UniProtKB/TrEMBL
-
G3UWC5
- Related
- ENSMUSP00000130930.3, ENSMUST00000166395.9
- Conserved Domains (1) summary
-
- pfam05920
Location:86 → 125
- Homeobox_KN; Homeobox KN domain
-
NM_001164076.1 → NP_001157548.1 homeobox protein TGIF1 isoform c
See identical proteins and their annotated locations for NP_001157548.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) represents use of an alternate promoter and 5' UTR and uses a downstream start codon, compared to variant 1. The resulting isoform (c) has a shorter N-terminus, compared to isoform a. Variants 3, 4, and 5 all encode the same isoform.
- Source sequence(s)
-
AC079441
- Consensus CDS
-
CCDS50174.1
- UniProtKB/TrEMBL
- D3Z0Q5, Q3TVD4
- Related
- ENSMUSP00000127139.2, ENSMUST00000172229.8
- Conserved Domains (1) summary
-
- pfam05920
Location:33 → 72
- Homeobox_KN; Homeobox KN domain
-
NM_001164077.1 → NP_001157549.1 homeobox protein TGIF1 isoform c
See identical proteins and their annotated locations for NP_001157549.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) represents use of an alternate promoter and 5' UTR and uses a downstream start codon, compared to variant 1. The resulting isoform (c) has a shorter N-terminus, compared to isoform a. Variants 3, 4, and 5 all encode the same isoform.
- Source sequence(s)
-
AC079441
- Consensus CDS
-
CCDS50174.1
- UniProtKB/TrEMBL
- D3Z0Q5, Q3TVD4
- Conserved Domains (1) summary
-
- pfam05920
Location:33 → 72
- Homeobox_KN; Homeobox KN domain
-
NM_001424959.1 → NP_001411888.1 homeobox protein TGIF1 isoform d
Status: VALIDATED
- Source sequence(s)
-
AC079441
- UniProtKB/TrEMBL
-
D3Z0Q5
-
NM_001424962.1 → NP_001411891.1 homeobox protein TGIF1 isoform c
Status: VALIDATED
- Source sequence(s)
-
AC079441
- UniProtKB/TrEMBL
- D3Z0Q5, Q3TVD4
-
NM_009372.3 → NP_033398.2 homeobox protein TGIF1 isoform b
See identical proteins and their annotated locations for NP_033398.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) represents use of an alternate promoter and 5' UTR, and uses a distinct start codon, compared to variant 1. The resulting isoform (b) has a shorter and distinct N-terminus, compared to isoform a.
- Source sequence(s)
-
AC079441, AK008909, AK160193, CD563532
- Consensus CDS
-
CCDS37683.1
- UniProtKB/Swiss-Prot
- P70284, Q921F9, Q99JS3
- UniProtKB/TrEMBL
-
D3Z0Q5
- Related
- ENSMUSP00000060512.9, ENSMUST00000059775.15
- Conserved Domains (1) summary
-
- pfam05920
Location:53 → 92
- Homeobox_KN; Homeobox KN domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000083.7 Reference GRCm39 C57BL/6J
- Range
-
71151200..71160527 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_036160474.1 → XP_036016367.1 homeobox protein TGIF1 isoform X2
- UniProtKB/TrEMBL
-
D3Z0Q5
- Conserved Domains (1) summary
-
- pfam05920
Location:52 → 91
- Homeobox_KN; Homeobox KN domain