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    1700008O03Rik RIKEN cDNA 1700008O03 gene [ Mus musculus (house mouse) ]

    Gene ID: 69349, updated on 27-Nov-2024

    Summary

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    Official Symbol
    1700008O03Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700008O03 geneprovided by MGI
    Primary source
    MGI:MGI:1916599
    See related
    Ensembl:ENSMUSG00000008028 AllianceGenome:MGI:1916599
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Orthologous to human C19orf81 (chromosome 19 open reading frame 81). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in testis adult (RPKM 18.3), whole brain E14.5 (RPKM 1.6) and 1 other tissue See more
    Orthologs
    human all
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    Genomic context

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    See 1700008O03Rik in Genome Data Viewer
    Location:
    7 B3; 7 28.83 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (44009467..44035116, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (44360043..44385694, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E129 Neighboring gene predicted gene 7238 Neighboring gene C-type lectin domain family 11, member a Neighboring gene SH3 and multiple ankyrin repeat domains 1 Neighboring gene STARR-seq mESC enhancer starr_18792 Neighboring gene predicted gene, 39001 Neighboring gene synaptotagmin III Neighboring gene STARR-positive B cell enhancer ABC_E4924 Neighboring gene STARR-seq mESC enhancer starr_18797 Neighboring gene predicted gene, 39002 Neighboring gene leucine rich repeat containing 4B Neighboring gene predicted gene, 39003

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Mouse screen reveals multiple new genes underlying mouse and human hearing loss. Ingham NJ, et al. PLoS Biol, 2019 Apr. PMID 30973865, Free PMC Article
    2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    3. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article
    4. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    5. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    putative uncharacterized protein C19orf81 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027049.1 → NP_081325.1  putative uncharacterized protein C19orf81 homolog

      See identical proteins and their annotated locations for NP_081325.1

      Status: VALIDATED

      Source sequence(s)
      AK005784, BC127243, BF467486
      Consensus CDS
      CCDS52230.1
      UniProtKB/Swiss-Prot
      D3Z070, Q9DAJ9
      Related
      ENSMUSP00000103566.2, ENSMUST00000107933.8
      Conserved Domains (1) summary
      pfam15876
      Location:23 → 179
      DUF4732; Domain of unknown function (DUF4732)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      44009467..44035116 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011250899.4 → XP_011249201.1  putative uncharacterized protein C19orf81 homolog isoform X3

      See identical proteins and their annotated locations for XP_011249201.1

      UniProtKB/TrEMBL
      H3BIU9
      Conserved Domains (1) summary
      pfam15876
      Location:2 → 148
      DUF4732; Domain of unknown function (DUF4732)

    2. XM_030242969.2 → XP_030098829.1  putative uncharacterized protein C19orf81 homolog isoform X4

      Conserved Domains (1) summary
      pfam15876
      Location:50 → 96
      DUF4732; Domain of unknown function (DUF4732)

    3. XM_030242968.1 → XP_030098828.1  putative uncharacterized protein C19orf81 homolog isoform X4

      Conserved Domains (1) summary
      pfam15876
      Location:50 → 96
      DUF4732; Domain of unknown function (DUF4732)

    4. XM_017312286.1 → XP_017167775.1  putative uncharacterized protein C19orf81 homolog isoform X1

      Conserved Domains (1) summary
      pfam15876
      Location:155 → 311
      DUF4732; Domain of unknown function (DUF4732)

    5. XM_006541172.5 → XP_006541235.1  putative uncharacterized protein C19orf81 homolog isoform X3

      See identical proteins and their annotated locations for XP_006541235.1

      UniProtKB/TrEMBL
      H3BIU9
      Related
      ENSMUSP00000123280.2, ENSMUST00000150886.2
      Conserved Domains (1) summary
      pfam15876
      Location:2 → 148
      DUF4732; Domain of unknown function (DUF4732)

    6. XM_011250900.4 → XP_011249202.1  putative uncharacterized protein C19orf81 homolog isoform X4

      Conserved Domains (1) summary
      pfam15876
      Location:50 → 96
      DUF4732; Domain of unknown function (DUF4732)

    7. XM_006541171.2 → XP_006541234.1  putative uncharacterized protein C19orf81 homolog isoform X2

      Conserved Domains (1) summary
      pfam15876
      Location:155 → 218
      DUF4732; Domain of unknown function (DUF4732)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    D3Z070.2 GenPept UniProtKB/Swiss-Prot:D3Z070

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