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    BC016579 cDNA sequence, BC016579 [ Mus musculus (house mouse) ]

    Gene ID: 212998, updated on 9-Dec-2024

    Summary

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    Official Symbol
    BC016579provided by MGI
    Official Full Name
    cDNA sequence, BC016579provided by MGI
    Primary source
    MGI:MGI:2384848
    See related
    Ensembl:ENSMUSG00000033187 AllianceGenome:MGI:2384848
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to be located in plasma membrane. Human ortholog(s) of this gene implicated in hypotrichosis 15. Orthologous to human C3orf52 (chromosome 3 open reading frame 52). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in colon adult (RPKM 1.6), large intestine adult (RPKM 0.8) and 9 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See BC016579 in Genome Data Viewer
    Location:
    16 B5; 16 29.76 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (45447211..45476215, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (45626848..45655852, complement)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1 Neighboring gene germinal center associated, signaling and motility Neighboring gene transmembrane serine protease 7 Neighboring gene STARR-seq mESC enhancer starr_40918 Neighboring gene STARR-seq mESC enhancer starr_40919 Neighboring gene transgelin 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Piao Y, et al. Genome Res, 2001 Sep. PMID 11544199, Free PMC Article
    2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Homology

    Clone Names

    • MGC27720

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    TPA-induced transmembrane protein homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001427036.1 → NP_001413965.1  TPA-induced transmembrane protein homolog isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC124636, AC166572
      UniProtKB/Swiss-Prot
      Q8C5C9, Q91YJ8

    2. NM_145389.3 → NP_663364.2  TPA-induced transmembrane protein homolog isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC124636, AC166572
      Consensus CDS
      CCDS49862.1
      UniProtKB/Swiss-Prot
      Q8C5C9, Q91YJ8
      UniProtKB/TrEMBL
      E9QP50
      Related
      ENSMUSP00000037651.8, ENSMUST00000036732.9

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      45447211..45476215 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006521974.3 → XP_006522037.1  TPA-induced transmembrane protein homolog isoform X3

    2. XM_036159868.1 → XP_036015761.1  TPA-induced transmembrane protein homolog isoform X4

    3. XM_036159867.1 → XP_036015760.1  TPA-induced transmembrane protein homolog isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8C5C9.1 GenPept UniProtKB/Swiss-Prot:Q8C5C9

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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