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    tnrc18 trinucleotide repeat containing 18 [ Danio rerio (zebrafish) ]

    Gene ID: 559514, updated on 9-Dec-2024

    Summary

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    Official Symbol
    tnrc18provided by ZNC
    Official Full Name
    trinucleotide repeat containing 18provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-100326-1
    See related
    Ensembl:ENSDARG00000077052 AllianceGenome:ZFIN:ZDB-GENE-100326-1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable chromatin binding activity. Is expressed in hypothalamus and telencephalon. Orthologous to human TNRC18 (trinucleotide repeat containing 18). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See tnrc18 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (40407451..40487683)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (40265578..40346988)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene ATP synthase membrane subunit f Neighboring gene solute carrier family 29 member 4a Neighboring gene actin, beta 2 Neighboring gene fascin actin-bundling protein 1a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. A new evolutionary model for the vertebrate actin family including two novel groups. Witjes L, et al. Mol Phylogenet Evol, 2019 Dec. PMID 31560986
    2. Genome-wide, whole mount in situ analysis of transcriptional regulators in zebrafish embryos. Armant O, et al. Dev Biol, 2013 Aug 15. PMID 23684812, Free PMC Article
    3. Comprehensive expression map of transcription regulators in the adult zebrafish telencephalon reveals distinct neurogenic niches. Diotel N, et al. J Comp Neurol, 2015 Jun 1. PMID 25556858, Free PMC Article
    4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    trinucleotide repeat-containing gene 18 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      40407451..40487683
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005164179.4 → XP_005164236.1  trinucleotide repeat-containing gene 18 protein isoform X3

      UniProtKB/TrEMBL
      A0A8M2BBN2, A0A8M6YWT3
      Conserved Domains (1) summary
      cd04714
      Location:2773 → 2917
      BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...

    2. XM_005164178.4 → XP_005164235.1  trinucleotide repeat-containing gene 18 protein isoform X1

      UniProtKB/TrEMBL
      A0A8M2BBE3, A0A8M6YWT3, X1WHA2
      Related
      ENSDARP00000129614.1, ENSDART00000155112.3
      Conserved Domains (1) summary
      cd04714
      Location:2784 → 2928
      BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...

    3. XM_002661214.6 → XP_002661260.2  trinucleotide repeat-containing gene 18 protein isoform X4

      UniProtKB/TrEMBL
      A0A8M1RDF0, A0A8M6YWT3
      Related
      ENSDARP00000094262.4, ENSDART00000103486.5
      Conserved Domains (1) summary
      cd04714
      Location:2772 → 2916
      BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...

    4. XM_068219343.1 → XP_068075444.1  trinucleotide repeat-containing gene 18 protein isoform X2

      UniProtKB/TrEMBL
      A0A8M6YWT3
    Nucleotide Protein
    Heading Accession and Version

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