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    pom121 POM121 transmembrane nucleoporin [ Danio rerio (zebrafish) ]

    Gene ID: 568298, updated on 9-Dec-2024

    Summary

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    Official Symbol
    pom121provided by ZNC
    Official Full Name
    POM121 transmembrane nucleoporinprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-6557
    See related
    Ensembl:ENSDARG00000055113 AllianceGenome:ZFIN:ZDB-GENE-030131-6557
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    wu:fa16c07; wu:fb30f12; wu:fl35g12
    Summary
    Orthologous to several human genes including POM121 (POM121 transmembrane nucleoporin). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See pom121 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (35166434..35186364, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (35225776..35242491, complement)

    Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene receptor-interacting serine-threonine kinase 4 Neighboring gene NOP2/Sun RNA methyltransferase 5 Neighboring gene yippee-like 2a Neighboring gene SMG8 nonsense mediated mRNA decay factor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Nuclear Pores Regulate Muscle Development and Maintenance by Assembling a Localized Mef2C Complex. Raices M, et al. Dev Cell, 2017 Jun 5. PMID 28586646, Free PMC Article
    2. Comprehensive maturity of nuclear pore complexes regulates zygotic genome activation. Shen W, et al. Cell, 2022 Dec 22. PMID 36493774
    3. A comparative map of the zebrafish genome. Woods IG, et al. Genome Res, 2000 Dec. PMID 11116086, Free PMC Article
    4. A Toolbox for Efficient Proximity-Dependent Biotinylation in Zebrafish Embryos. Rosenthal SM, et al. Mol Cell Proteomics, 2021. PMID 34332124, Free PMC Article
    5. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    nuclear envelope pore membrane protein POM 121
    Names
    POM121 membrane glycoprotein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001366408.1 → NP_001353337.1  nuclear envelope pore membrane protein POM 121

      Status: VALIDATED

      Source sequence(s)
      BX465844, CT030221
      UniProtKB/TrEMBL
      A0A8N7UTE0, F1R543
      Related
      ENSDARP00000107396.2, ENSDART00000127805.3
      Conserved Domains (2) summary
      pfam15229
      Location:286 → 525
      POM121; POM121 family
      cl25496
      Location:599 → 1039
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007121.7 Reference GRCz11 Primary Assembly

      Range
      35166434..35186364 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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