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    fam98a family with sequence similarity 98 member A [ Danio rerio (zebrafish) ]

    Gene ID: 559900, updated on 9-Dec-2024

    Summary

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    Official Symbol
    fam98aprovided by ZNC
    Official Full Name
    family with sequence similarity 98 member Aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-091202-6
    See related
    Ensembl:ENSDARG00000078391 AllianceGenome:ZFIN:ZDB-GENE-091202-6
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to be part of tRNA-splicing ligase complex. Orthologous to human FAM98A (family with sequence similarity 98 member A). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See fam98a in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (23212025..23221567, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (23191935..23201540, complement)

    Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene latent transforming growth factor beta binding protein 1 Neighboring gene RAS guanyl releasing protein 3 (calcium and DAG-regulated) Neighboring gene si:ch211-195b21.5 Neighboring gene TBC1 domain family, member 12a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    part_of tRNA-splicing ligase complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    protein FAM98A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007128.7 Reference GRCz11 Primary Assembly

      Range
      23212025..23221567 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_679482.10 → XP_684574.3  protein FAM98A

      UniProtKB/TrEMBL
      A0A8M9Q2G2, X1WEE6
      Related
      ENSDARP00000128597.1, ENSDART00000156411.2
      Conserved Domains (1) summary
      pfam10239
      Location:7 → 320
      DUF2465; Protein of unknown function (DUF2465)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394988.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      234381..243789 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021473146.2 → XP_021328821.1  protein FAM98A

      UniProtKB/TrEMBL
      A0A8M9Q2G2, X1WEE6
      Conserved Domains (1) summary
      pfam10239
      Location:7 → 320
      DUF2465; Protein of unknown function (DUF2465)

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395330.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      111917..121459 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021474366.2 → XP_021330041.1  protein FAM98A

      UniProtKB/TrEMBL
      A0A8M9Q2G2, X1WEE6
      Conserved Domains (1) summary
      pfam10239
      Location:7 → 320
      DUF2465; Protein of unknown function (DUF2465)
    Nucleotide Protein
    Heading Accession and Version

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