nup35 nucleoporin 35 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: nup35provided by ZNC
Official Full Name: nucleoporin 35provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-9407
See related: Ensembl:ENSDARG00000012222 AllianceGenome:ZFIN:ZDB-GENE-030131-9407
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fj68d11; zgc:65979; wu:fj68d11
Summary: Predicted to enable phospholipid binding activity. Predicted to be a structural constituent of nuclear pore. Predicted to be involved in NLS-bearing protein import into nucleus and nuclear pore organization. Predicted to act upstream of or within nucleocytoplasmic transport and protein transport. Predicted to be located in nuclear membrane. Predicted to be part of nuclear pore central transport channel and nuclear pore nuclear basket. Orthologous to human NUP35 (nucleoporin 35). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 9

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	9	NC_007120.7 (12259172..12269980, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	9	NC_007120.6 (12287624..12298779, complement)

Chromosome 9 - NC_007120.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info
enables phospholipid binding	IBA Inferred from Biological aspect of Ancestor more info
enables structural constituent of nuclear pore	IBA Inferred from Biological aspect of Ancestor more info
enables structural constituent of nuclear pore	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in NLS-bearing protein import into nucleus	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within mRNA transport	IEA Inferred from Electronic Annotation more info
involved_in mRNA transport	IEA Inferred from Electronic Annotation more info
involved_in nuclear pore organization	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within nucleocytoplasmic transport	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within protein transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nuclear membrane	IEA Inferred from Electronic Annotation more info
part_of nuclear pore	IEA Inferred from Electronic Annotation more info
part_of nuclear pore central transport channel	IBA Inferred from Biological aspect of Ancestor more info
part_of nuclear pore nuclear basket	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: nucleoporin NUP35

Names: 35 kDa nucleoporin; nuclear pore complex protein Nup53; nucleoporin NUP53; nucleoporin Nup35

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_200066.1 → NP_956360.1 nucleoporin NUP35

See identical proteins and their annotated locations for NP_956360.1

Status: PROVISIONAL

Source sequence(s)

BC061958

UniProtKB/Swiss-Prot

Q6P6X9

Related

ENSDARP00000033355.5, ENSDART00000032344.7

Conserved Domains (1) summary

cd12722
Location:157 → 230

RRM_Nup53; RNA recognition motif in nucleoporin Nup53

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007120.7 Reference GRCz11 Primary Assembly

Range

12259172..12269980 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_009304508.4 → XP_009302783.1 nucleoporin NUP35 isoform X1

UniProtKB/TrEMBL

A0A8M3AVT2

Conserved Domains (1) summary

cd12722
Location:157 → 230

RRM_Nup53; RNA recognition motif in nucleoporin Nup53