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    ifrd1 interferon-related developmental regulator 1 [ Danio rerio (zebrafish) ]

    Gene ID: 555178, updated on 9-Dec-2024

    Summary

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    Official Symbol
    ifrd1provided by ZNC
    Official Full Name
    interferon-related developmental regulator 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-6132
    See related
    Ensembl:ENSDARG00000068708 AllianceGenome:ZFIN:ZDB-GENE-030131-6132
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    im:7067566; wu:fi35f04; wu:fj67a06; zgc:154080; si:dkey-192l17.2
    Summary
    Predicted to be active in nucleus. Orthologous to human IFRD1 (interferon related developmental regulator 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See ifrd1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (6799801..6809278, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (6791231..6800708, complement)

    Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137491514 Neighboring gene transmembrane protein 168a Neighboring gene dedicator of cytokinesis 4b Neighboring gene uncharacterized LOC103910395

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Number of inadvertent RNA targets for morpholino knockdown in Danio rerio is largely underestimated: evidence from the study of Ser/Arg-rich splicing factors. Joris M, et al. Nucleic Acids Res, 2017 Sep 19. PMID 28934490, Free PMC Article
    2. A comparative map of the zebrafish genome. Woods IG, et al. Genome Res, 2000 Dec. PMID 11116086, Free PMC Article
    3. Effects of acetyl L-carnitine on zebrafish embryos: Phenotypic and gene expression studies. Gu Q, et al. J Appl Toxicol, 2021 Feb. PMID 32691447
    4. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
    5. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Clone Names

    • MGC154080

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    interferon-related developmental regulator 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001076555.1 → NP_001070023.1  interferon-related developmental regulator 1

      See identical proteins and their annotated locations for NP_001070023.1

      Status: PROVISIONAL

      Source sequence(s)
      BC124536
      UniProtKB/TrEMBL
      Q08BV7, Q1LUD0
      Related
      ENSDARP00000090241.3, ENSDART00000099467.4
      Conserved Domains (2) summary
      pfam04836
      Location:369 → 421
      IFRD_C; Interferon-related protein conserved region
      pfam05004
      Location:21 → 323
      IFRD; Interferon-related developmental regulator (IFRD)

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007115.7 Reference GRCz11 Primary Assembly

      Range
      6799801..6809278 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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