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    utp20 UTP20 small subunit processome component [ Danio rerio (zebrafish) ]

    Gene ID: 557849, updated on 9-Dec-2024

    Summary

    Official Symbol
    utp20provided by ZNC
    Official Full Name
    UTP20 small subunit processome componentprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-080225-38
    See related
    Ensembl:ENSDARG00000099280 AllianceGenome:ZFIN:ZDB-GENE-080225-38
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    im:7159098; wu:fb83c08
    Summary
    Predicted to be part of 90S preribosome and small-subunit processome. Predicted to be active in nucleolus. Is expressed in immature eye; myotome; nervous system; pharyngeal arch; and somite. Orthologous to human UTP20 (UTP20 small subunit processome component). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See utp20 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    62
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (5867907..5910252)
    105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (5859252..5901678)

    Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene ubiquitin specific peptidase 18 Neighboring gene LYR motif containing 5a Neighboring gene solute carrier family 5 member 8 Neighboring gene uncharacterized LOC137491391 Neighboring gene ADP-ribosylation factor-like 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    part_of 90S preribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of small-subunit processome IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    small subunit processome component 20 homolog
    Names
    UTP20 small subunit (SSU) processome component
    UTP20, small subunit (SSU) processome component, homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007115.7 Reference GRCz11 Primary Assembly

      Range
      5867907..5910252
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009300013.4XP_009298288.1  small subunit processome component 20 homolog

      UniProtKB/TrEMBL
      A0A0R4IQW7, A0A8M3AYI7
      Related
      ENSDARP00000138699.1, ENSDART00000166591.2
      Conserved Domains (1) summary
      pfam07539
      Location:9161539
      DRIM; Down-regulated in metastasis