hnrnpul1 heterogeneous nuclear ribonucleoprotein U-like 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: hnrnpul1provided by ZNC
Official Full Name: heterogeneous nuclear ribonucleoprotein U-like 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-2432
See related: Ensembl:ENSDARG00000040564 AllianceGenome:ZFIN:ZDB-GENE-040426-2432
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: hnrpul1; zgc:85971; wu:fb53d10; wu:fk45c03
Summary: Predicted to enable RNA binding activity. Acts upstream of or within alternative mRNA splicing, via spliceosome; pectoral fin development; and tendon development. Predicted to be part of ribonucleoprotein complex. Predicted to be active in nucleus. Orthologous to human HNRNPUL1 (heterogeneous nuclear ribonucleoprotein U like 1). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 18

Exon count:: 16

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	18	NC_007129.7 (35807588..35837673, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	18	NC_007129.6 (35826580..35856665, complement)

Chromosome 18 - NC_007129.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Markers

fb53d10.x1 (e-PCR)
- UniSTS:203306

fe37d11.x1 (e-PCR)
- UniSTS:196433

fc04h08.y1 (e-PCR)
- UniSTS:192185

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables RNA binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in alternative mRNA splicing, via spliceosome	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within alternative mRNA splicing, via spliceosome	IGI Inferred from Genetic Interaction more info	PubMed
acts_upstream_of_or_within pectoral fin development	IGI Inferred from Genetic Interaction more info	PubMed
acts_upstream_of_or_within tendon development	IGI Inferred from Genetic Interaction more info	PubMed

Component	Evidence Code	Pubs
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
part_of ribonucleoprotein complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: heterogeneous nuclear ribonucleoprotein U-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_213271.1 → NP_998436.1 heterogeneous nuclear ribonucleoprotein U-like protein 1

See identical proteins and their annotated locations for NP_998436.1

Status: PROVISIONAL

Source sequence(s)

BC068436

UniProtKB/TrEMBL

Q6NUT5

Related

ENSDARP00000059359.4, ENSDART00000059360.5

Conserved Domains (4) summary

smart00513
Location:5 → 39

SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation

pfam13671
Location:413 → 557

AAA_33; AAA domain

cd12884
Location:201 → 378

SPRY_hnRNP; SPRY domain in heterogeneous nuclear ribonucleoprotein U-like (hnRNP) protein 1

cl17190
Location:413 → 509

NK; Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates ...